JASPAR CORE

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Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1110.2 Nr1H4 Mus musculus Nuclear Thyroid
MA1111.1 NR2F2 Homo sapiens Nuclear RXR-related
MA1112.1 NR4A1 Homo sapiens Nuclear NGFI-B-related
MA1112.2 NR4A1 Homo sapiens Nuclear NGFI-B-related
MA1113.1 PBX2 Homo sapiens Homeo TALE-type
MA1113.2 PBX2 Homo sapiens Homeo TALE-type
MA1114.1 PBX3 Homo sapiens Homeo TALE-type
MA1115.1 POU5F1 Homo sapiens Homeo POU
MA1116.1 RBPJ Homo sapiens Rel CSL-related
MA1117.1 RELB Homo sapiens Rel NF-kappaB-related
Showing 10 profiles of page 149 from 243 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.