JASPAR CORE

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Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1146.1 NR1H4::RXRA Homo sapiens Nuclear::Nuclear Thyroid::RXR-related
MA1147.1 NR4A2::RXRA Homo sapiens Nuclear::Nuclear NGFI-B-related::RXR-related
MA1148.1 PPARA::RXRA Homo sapiens Nuclear::Nuclear Thyroid::RXR-related
MA1149.1 RARA::RXRG Homo sapiens Nuclear::Nuclear Thyroid::RXR-related
MA1150.1 RORB Homo sapiens Nuclear Thyroid
MA1151.1 RORC Homo sapiens Nuclear Thyroid
MA1152.1 SOX15 Homo sapiens High-mobility SOX-related
MA1153.1 Smad4 Mus musculus SMAD/NF-1 SMAD
MA1154.1 ZNF282 Homo sapiens C2H2 More
MA1155.1 ZSCAN4 Homo sapiens C2H2 More
Showing 10 profiles of page 153 from 243 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.