JASPAR CORE

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Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1842.1 msl-1 Drosophila melanogaster
MA1843.1 AP4 Ciona intestinalis Basic bHLH-ZIP
MA1844.1 Atbf Ciona intestinalis Homeo HOX
MA1845.1 Atoh7 Ciona intestinalis Basic Tal-related
MA1846.1 Brachyury Ciona intestinalis T-Box Brachyury-related
MA1847.1 Bsx Ciona intestinalis Homeo NK
MA1848.1 Cebpg Ciona intestinalis Basic CEBP-related
MA1849.1 Creb1 Ciona intestinalis Basic CREB-related
MA1850.1 Dlx-b Ciona intestinalis Homeo NK
MA1851.1 Dlx-c Ciona intestinalis Homeo NK
Showing 10 profiles of page 223 from 243 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.