JASPAR CORE

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Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0586.1 SPL14 Arabidopsis thaliana C2H2 SBP
MA0586.2 SPL14 Arabidopsis thaliana C2H2 SBP
MA0587.1 TCP16 Arabidopsis thaliana Basic TCP
MA0588.1 TGA1 Arabidopsis thaliana Basic Group
MA0589.1 WRKY1 Arabidopsis thaliana GCM WRKY
MA0590.1 LFY Arabidopsis thaliana LEAFY
MA0591.1 Bach1::Mafk Mus musculus Basic::Basic Jun-related::Maf-related
MA0592.1 ESRRA Homo sapiens Nuclear Steroid
MA0592.2 Esrra Mus musculus Nuclear Steroid
MA0592.3 ESRRA Homo sapiens Nuclear Steroid
Showing 10 profiles of page 82 from 243 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.