Detailed information of matrix profile MA0782.1

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Profile summary
Name: PKNOX1
Matrix ID: MA0782.1
Class: Homeo
Family: TALE-type
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 25233378
Uniprot ID: P55347  
Source: 23332764
Comment: Data

Sequence logo

Frequency matrix

         
A [ 94 23 17458 11 17768 22 810 5 352 191 19 17625 ]
C [ 234 95 6 18108 3 7 6611 35 13 101 17957 57 ]
G [ 73 22060 146 0 38 21059 7095 16 22141 9 69 193 ]
T [ 19207 13 22 8 7 1185 19 19248 6 18745 13 421 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0782.1 MA0782 1 PKNOX1 Homo sapiens
TALE-type Homeo
MA0782.2 MA0782 2 PKNOX1 Homo sapiens
TALE-type Homeo
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0560.1

ChIP-seq Centrality
-log(P-value): -12160.5

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0560.1

ChIP-seq Centrality
-log(P-value): -13581.4

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: