

rsync -ruptl /home/rsat/packages/rsat-2021/rsat/perl-scripts/lib/js results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees


rsync -ruptl /home/rsat/packages/rsat-2021/rsat/public_html/images/program_icons/matrix-clustering_icons results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees


/home/rsat/packages/rsat-2021/rsat/perl-scripts/convert-matrix -i data/motifs/plants/JASPAR_2022_UNVALIDATED_plants.tf -from tf -to tf -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/JASPAR_2022_plants_UNVALIDATED_input_motifs_processed_1.tf


/home/rsat/packages/rsat-2021/rsat/perl-scripts/convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/JASPAR_2022_plants_UNVALIDATED_input_motifs_processed_1.tf -from tf -to transfac -prefix_id JASPAR_2022_plants_UNVALIDATED -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/JASPAR_2022_plants_UNVALIDATED_input_motifs_processed.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/JASPAR_2022_plants_UNVALIDATED_input_motifs_processed.tf  > results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf


/home/rsat/packages/rsat-2021/rsat/perl-scripts/convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -split -from tf -to tf -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/motif


 cat /home/rsat/packages/rsat-2021/rsat/R-scripts/matrix-clustering.R | /usr/bin/R --slave --no-save --no-restore --no-environ --args " infile = 'results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/pairwise_compa.tab'; hclust.method = 'average'; description.file = 'results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/pairwise_compa_matrix_descriptions.tab'; distance.table = 'results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/distance_table.tab'; alignment.file = 'results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/alignment_table.tab'; verbosity = 1; metric = 'Ncor'; heatmap.color.palette = 'YlOrRd'; heatmap.color.classes = '9'; export.newick = 0; radial.only = 0; draw.heatmap = 1; draw.consensus = 0; pos.hclust.in.heatmap = 'column'; lthsp = 'Ncor_0.4_cor_0.6_'; out.prefix = 'results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED'; "


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_2_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_2_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_1_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_1_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_6_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_6_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_7_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_7_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_4_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_4_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_8_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_8_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_3_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_3_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_5_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_5_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_9_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_9_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_11_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_11_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_12_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_12_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_14_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_14_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_10_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_10_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_15_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_15_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_16_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_16_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_13_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_13_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_17_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_17_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_18_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_18_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_22_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_22_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_23_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_23_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_19_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_19_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_24_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_24_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_21_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_21_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_20_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_20_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_26_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_26_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_25_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_25_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_30_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_30_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_27_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_27_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_29_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_29_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_28_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_28_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_31_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_31_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_32_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_32_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_34_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_34_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_33_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_33_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_37_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_37_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_35_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_35_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_38_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_38_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_40_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_40_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_39_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_39_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_36_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_36_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_42_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_42_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_41_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_41_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_45_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_45_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_46_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_46_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_44_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_44_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_43_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_43_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_47_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_47_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_48_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_48_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_49_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_49_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_50_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_50_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_52_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_52_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_53_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_53_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_51_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_51_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_54_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_54_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_56_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_56_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_55_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_55_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_57_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_57_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_58_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_58_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_59_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_59_transfac_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/cluster_60_motif_IDs.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_data/cluster_60_transfac_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m176_MA1095_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m179_MA1098_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m135_MA1035_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m673_UN0026_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m682_UN0039_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m692_UN0050_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_1/cluster_11_node_1_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m149_MA1050_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m160_MA1066_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_node_3_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m721_UN0386_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m728_UN0394_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_3/cluster_10_node_3_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m649_MA1664_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m720_UN0379_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_1/cluster_10_node_1_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m162_MA1071_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m682_UN0039_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m692_UN0050_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_3/cluster_11_node_3_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m652_MA1667_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m649_MA1664_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m720_UN0379_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_2/cluster_10_node_2_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_1/cluster_11_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_11 -name cluster_11 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_1/cluster_11_node_1_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_3/cluster_10_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_3/cluster_10_node_3_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_3/cluster_11_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_11 -name cluster_11 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_3/cluster_11_node_3_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_2/cluster_10_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_2/cluster_10_node_2_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_2/cluster_11_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_11 -name cluster_11 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_2/cluster_11_node_2_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_1/cluster_10_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_1/cluster_10_node_1_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_node_3_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_1/cluster_11_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194304_w4ia4z


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_1/cluster_10_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194304_fLbIAo


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_2/cluster_10_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194304_Hn1sVY


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_3/cluster_10_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194304_GYi2jx


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_3/cluster_11_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194304_2BSqEf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_2/cluster_11_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194304_GZ9HSA


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194305_F4pr1N


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194305_3FEtE7


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194305_0ngiXb


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_1/cluster_10_node_1_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_3/cluster_10_node_3_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_1/cluster_11_node_1_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_2/cluster_10_node_2_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_3/cluster_11_node_3_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_2/cluster_11_node_2_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_node_3_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m4_MA0053_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m6_MA0064_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_6/cluster_11_node_6_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m497_MA1758_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m721_UN0386_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m728_UN0394_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_4/cluster_10_node_4_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m124_MA1022_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m95_MA0981_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_4/cluster_11_node_4_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m158_MA1063_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m677_UN0032_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_6/cluster_1_node_6_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m161_MA1067_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m177_MA1096_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_5/cluster_1_node_5_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m667_UN0016_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m96_MA0982_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_5/cluster_11_node_5_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m121_MA1019_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m678_UN0034_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_node_4_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m372_MA1383_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m377_MA1389_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_5/cluster_10_node_5_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_6/cluster_11_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_11 -name cluster_11 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_6/cluster_11_node_6_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_4/cluster_10_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_4/cluster_10_node_4_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_5/cluster_10_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_5/cluster_10_node_5_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_4/cluster_11_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_11 -name cluster_11 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_4/cluster_11_node_4_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_5/cluster_11_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_11 -name cluster_11 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_5/cluster_11_node_5_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_node_4_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_5/cluster_1_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_5/cluster_1_node_5_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_6/cluster_1_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_6/cluster_1_node_6_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_4/cluster_11_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194307_TVcjT9


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_5/cluster_11_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194307_6gHmqe


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_4/cluster_10_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194307_jD7OpM


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_6/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194307_jepSHc


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_6/cluster_11_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194307_n6d2bM


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_5/cluster_10_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194307_HDsLOo


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_5/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194307_a2p2SO


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194307_v6lA66


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m630_MA1165_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m644_MA1386_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_6/cluster_10_node_6_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_4/cluster_11_node_4_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_4/cluster_10_node_4_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_6/cluster_10_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_6/cluster_10_node_6_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_6/cluster_1_node_6_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_5/cluster_11_node_5_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_6/cluster_11_node_6_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_5/cluster_1_node_5_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_node_4_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_5/cluster_10_node_5_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_6/cluster_10_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194308_LIs51Y


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_6/cluster_10_node_6_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m407_MA1428_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m121_MA1019_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m678_UN0034_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_7/cluster_1_node_7_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m100_MA0987_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m124_MA1022_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m95_MA0981_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_7/cluster_11_node_7_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m658_UN0002_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m679_UN0036_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m667_UN0016_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m96_MA0982_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_8/cluster_11_node_8_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m703_UN0070_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m710_UN0080_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_7/cluster_10_node_7_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m188_MA1166_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m373_MA1384_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_8/cluster_10_node_8_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m661_UN0007_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m100_MA0987_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m124_MA1022_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m95_MA0981_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_9/cluster_11_node_9_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m135_MA1035_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m673_UN0026_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m161_MA1067_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m177_MA1096_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_8/cluster_1_node_8_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m178_MA1097_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m149_MA1050_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m160_MA1066_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_9/cluster_1_node_9_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_7/cluster_1_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_7/cluster_1_node_7_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_8/cluster_1_node_8_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_8/cluster_1_node_8_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_9/cluster_11_node_9_cat.tf -v 0 -in_format tf -out_format tf -id cluster_11 -name cluster_11 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_9/cluster_11_node_9_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_8/cluster_10_node_8_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_8/cluster_10_node_8_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_8/cluster_1_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194310_e5u0xf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_7/cluster_1_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194310_uw5GVM


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_9/cluster_11_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194310_f9CCDR


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_7/cluster_11_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194311_dgLZBQ


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_9/cluster_1_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194311_Gn4QHc


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_7/cluster_10_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194311_aYWPIt


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_8/cluster_11_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194311_hA2VBu


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_8/cluster_10_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194311_jO8rPr


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_8/cluster_1_node_8_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_7/cluster_1_node_7_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_7/cluster_11_node_7_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_9/cluster_11_node_9_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_7/cluster_10_node_7_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_9/cluster_1_node_9_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_8/cluster_10_node_8_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_8/cluster_11_node_8_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m629_MA1163_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m372_MA1383_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m377_MA1389_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_9/cluster_10_node_9_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m131_MA1031_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m159_MA1064_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_11/cluster_1_node_11_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m190_MA1168_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m630_MA1165_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m644_MA1386_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_10/cluster_10_node_10_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m1_MA0020_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m2_MA0021_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_11/cluster_11_node_11_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m674_UN0027_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m97_MA0983_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_10/cluster_11_node_10_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m176_MA1095_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m179_MA1098_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m178_MA1097_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m149_MA1050_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m160_MA1066_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_10/cluster_1_node_10_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m650_MA1665_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m651_MA1666_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_11/cluster_10_node_11_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m90_MA0973_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m661_UN0007_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m100_MA0987_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m124_MA1022_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m95_MA0981_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_12/cluster_11_node_12_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m690_UN0048_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m407_MA1428_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m121_MA1019_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m678_UN0034_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_12/cluster_1_node_12_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_9/cluster_10_node_9_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_9/cluster_10_node_9_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_10/cluster_10_node_10_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_10/cluster_10_node_10_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_11/cluster_11_node_11_cat.tf -v 0 -in_format tf -out_format tf -id cluster_11 -name cluster_11 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_11/cluster_11_node_11_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_11/cluster_1_node_11_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_11/cluster_1_node_11_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_12/cluster_11_node_12_cat.tf -v 0 -in_format tf -out_format tf -id cluster_11 -name cluster_11 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_12/cluster_11_node_12_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_11/cluster_10_node_11_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_11/cluster_10_node_11_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_12/cluster_1_node_12_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_12/cluster_1_node_12_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_10/cluster_11_node_10_cat.tf -v 0 -in_format tf -out_format tf -id cluster_11 -name cluster_11 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_10/cluster_11_node_10_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_10/cluster_1_node_10_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_10/cluster_1_node_10_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_9/cluster_10_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194313_EOhWTq


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_10/cluster_10_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194313_natM0K


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_12/cluster_11_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194313_RGAHEP


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_11/cluster_10_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194313_JvAIzZ


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_11/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194313_fVwXtw


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_11/cluster_11_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194313_aSYpkF


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_10/cluster_11_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194313_wE7AYt


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_10/cluster_1_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194314_7qtABl


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_12/cluster_1_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194313_7WnORy


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_9/cluster_10_node_9_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_10/cluster_10_node_10_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_11/cluster_1_node_11_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_10/cluster_11_node_10_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_11/cluster_11_node_11_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_12/cluster_11_node_12_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_10/cluster_1_node_10_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_11/cluster_10_node_11_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_12/cluster_1_node_12_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m152_MA1054_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m49_MA0587_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_15/cluster_1_node_15_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m696_UN0059_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m697_UN0060_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_14/cluster_11_node_14_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m288_MA1286_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m284_MA1282_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m291_MA1289_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_14/cluster_1_node_14_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m665_UN0013_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m703_UN0070_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m710_UN0080_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_13/cluster_10_node_13_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m499_MA1760_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m497_MA1758_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m721_UN0386_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m728_UN0394_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_12/cluster_10_node_12_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m284_MA1282_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m291_MA1289_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_13/cluster_1_node_13_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m102_MA0989_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m90_MA0973_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m661_UN0007_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m100_MA0987_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m124_MA1022_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m95_MA0981_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_13/cluster_11_node_13_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_15/cluster_1_node_15_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_15/cluster_1_node_15_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_14/cluster_11_node_14_cat.tf -v 0 -in_format tf -out_format tf -id cluster_11 -name cluster_11 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_14/cluster_11_node_14_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_14/cluster_1_node_14_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_14/cluster_1_node_14_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_12/cluster_10_node_12_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_12/cluster_10_node_12_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_13/cluster_11_node_13_cat.tf -v 0 -in_format tf -out_format tf -id cluster_11 -name cluster_11 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_13/cluster_11_node_13_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_13/cluster_10_node_13_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_13/cluster_10_node_13_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_13/cluster_10_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194316_acULG0


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_14/cluster_1_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194316_JAp1bR


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_12/cluster_10_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194316_KBbrQ4


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_13/cluster_11_nb_motifs_6.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194316_r2jmzP


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_14/cluster_11_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194316_6TKG0z


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_15/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194316_yPIaZ8


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_13/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194316_Xr4yOd


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m162_MA1071_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m682_UN0039_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m692_UN0050_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m674_UN0027_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m97_MA0983_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_15/cluster_11_node_15_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_13/cluster_10_node_13_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_14/cluster_1_node_14_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_13/cluster_11_node_13_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_15/cluster_1_node_15_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_14/cluster_11_node_14_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_13/cluster_1_node_13_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_15/cluster_11_node_15_cat.tf -v 0 -in_format tf -out_format tf -id cluster_11 -name cluster_11 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_15/cluster_11_node_15_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_12/cluster_10_node_12_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_15/cluster_11_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194317_2L7CTz


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m500_MA1761_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m499_MA1760_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m497_MA1758_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m721_UN0386_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m728_UN0394_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_14/cluster_10_node_14_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_15/cluster_11_node_15_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_14/cluster_10_node_14_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_14/cluster_10_node_14_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_14/cluster_10_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194318_slDLc2


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m187_MA1164_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m189_MA1167_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_15/cluster_10_node_15_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m273_MA1269_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m282_MA1280_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_16/cluster_11_node_16_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m158_MA1063_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m677_UN0032_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m690_UN0048_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m407_MA1428_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m121_MA1019_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m678_UN0034_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_16/cluster_1_node_16_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m292_MA1290_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m288_MA1286_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m284_MA1282_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m291_MA1289_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_18/cluster_1_node_18_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m131_MA1031_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m159_MA1064_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m152_MA1054_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m49_MA0587_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_17/cluster_1_node_17_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_14/cluster_10_node_14_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_15/cluster_10_node_15_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_15/cluster_10_node_15_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_16/cluster_11_node_16_cat.tf -v 0 -in_format tf -out_format tf -id cluster_11 -name cluster_11 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_16/cluster_11_node_16_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_18/cluster_1_node_18_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_18/cluster_1_node_18_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_16/cluster_1_node_16_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_16/cluster_1_node_16_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_17/cluster_1_node_17_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_17/cluster_1_node_17_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_15/cluster_10_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194319_rKtCET


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_17/cluster_1_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194320_lEydyJ


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_18/cluster_1_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194320_KwDaRp


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_16/cluster_11_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194320_ISCL5q


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_16/cluster_1_nb_motifs_6.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194320_L6MYWK


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m583_MA2023_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m629_MA1163_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m372_MA1383_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m377_MA1389_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_16/cluster_10_node_16_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m4_MA0053_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m6_MA0064_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m1_MA0020_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m2_MA0021_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_18/cluster_11_node_18_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m102_MA0989_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m90_MA0973_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m661_UN0007_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m100_MA0987_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m124_MA1022_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m95_MA0981_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m696_UN0059_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m697_UN0060_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_17/cluster_11_node_17_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_15/cluster_10_node_15_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_18/cluster_11_node_18_cat.tf -v 0 -in_format tf -out_format tf -id cluster_11 -name cluster_11 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_18/cluster_11_node_18_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_16/cluster_11_node_16_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_18/cluster_1_node_18_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_17/cluster_1_node_17_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_16/cluster_10_node_16_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_16/cluster_10_node_16_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_17/cluster_11_node_17_cat.tf -v 0 -in_format tf -out_format tf -id cluster_11 -name cluster_11 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_17/cluster_11_node_17_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_16/cluster_1_node_16_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_18/cluster_11_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194320_URimHl


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_16/cluster_10_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194320_0bqpXM


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_17/cluster_11_nb_motifs_8.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194320_YOtrAx


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_18/cluster_11_node_18_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_17/cluster_11_node_17_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_16/cluster_10_node_16_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m128_MA1027_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m129_MA1028_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_17/cluster_10_node_17_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m277_MA1275_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m437_MA0974_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_19/cluster_11_node_19_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m289_MA1287_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m290_MA1288_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_20/cluster_1_node_20_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m579_MA2019_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m580_MA2020_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_18/cluster_10_node_18_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m676_UN0030_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m176_MA1095_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m179_MA1098_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m178_MA1097_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m149_MA1050_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m160_MA1066_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_19/cluster_1_node_19_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_20/cluster_1_node_20_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_20/cluster_1_node_20_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_19/cluster_11_node_19_cat.tf -v 0 -in_format tf -out_format tf -id cluster_11 -name cluster_11 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_19/cluster_11_node_19_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_18/cluster_10_node_18_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_18/cluster_10_node_18_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_19/cluster_1_node_19_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_19/cluster_1_node_19_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_17/cluster_10_node_17_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_17/cluster_10_node_17_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_18/cluster_10_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194322_457lCx


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_19/cluster_1_nb_motifs_6.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194322_mX7dbo


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_19/cluster_11_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194322_bgAcFv


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_17/cluster_10_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194322_ido2FV


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_20/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194323_x71w6i


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m474_MA1735_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m665_UN0013_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m703_UN0070_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m710_UN0080_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_19/cluster_10_node_19_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m278_MA1276_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m102_MA0989_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m90_MA0973_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m661_UN0007_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m100_MA0987_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m124_MA1022_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m95_MA0981_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m696_UN0059_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m697_UN0060_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_20/cluster_11_node_20_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m158_MA1063_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m677_UN0032_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m690_UN0048_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m407_MA1428_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m121_MA1019_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m678_UN0034_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m676_UN0030_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m176_MA1095_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m179_MA1098_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m178_MA1097_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m149_MA1050_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m160_MA1066_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_21/cluster_1_node_21_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_18/cluster_10_node_18_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_19/cluster_1_node_19_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_17/cluster_10_node_17_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_19/cluster_11_node_19_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_20/cluster_1_node_20_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_19/cluster_10_node_19_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_19/cluster_10_node_19_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_20/cluster_11_node_20_cat.tf -v 0 -in_format tf -out_format tf -id cluster_11 -name cluster_11 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_20/cluster_11_node_20_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_21/cluster_1_node_21_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_21/cluster_1_node_21_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_19/cluster_10_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194324_L5shne


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_20/cluster_11_nb_motifs_9.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194324_CZAhm5


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_21/cluster_1_nb_motifs_12.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194324_BQ9hzw


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m92_MA0977_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m658_UN0002_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m679_UN0036_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m667_UN0016_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m96_MA0982_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_21/cluster_11_node_21_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_19/cluster_10_node_19_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_20/cluster_11_node_20_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_21/cluster_1_node_21_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_21/cluster_11_node_21_cat.tf -v 0 -in_format tf -out_format tf -id cluster_11 -name cluster_11 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_21/cluster_11_node_21_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_21/cluster_11_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194324_Lz11zi


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m645_MA1390_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m190_MA1168_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m630_MA1165_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m644_MA1386_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_20/cluster_10_node_20_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m293_MA1291_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m289_MA1287_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m290_MA1288_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_22/cluster_1_node_22_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m636_MA1272_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m277_MA1275_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m437_MA0974_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_22/cluster_11_node_22_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m131_MA1031_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m159_MA1064_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m152_MA1054_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m49_MA0587_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m158_MA1063_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m677_UN0032_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m690_UN0048_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m407_MA1428_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m121_MA1019_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m678_UN0034_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m676_UN0030_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m176_MA1095_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m179_MA1098_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m178_MA1097_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m149_MA1050_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m160_MA1066_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_23/cluster_1_node_23_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_21/cluster_11_node_21_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_23/cluster_1_node_23_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_23/cluster_1_node_23_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_22/cluster_11_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194326_RXAK19


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_22/cluster_1_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194326_FYn0if


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_20/cluster_10_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194326_abtntt


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_23/cluster_1_nb_motifs_16.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194326_2J0btU


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m374_MA1385_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m583_MA2023_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m629_MA1163_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m372_MA1383_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m377_MA1389_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_21/cluster_10_node_21_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_21/cluster_10_node_21_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_21/cluster_10_node_21_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_22/cluster_11_node_22_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_20/cluster_10_node_20_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_22/cluster_1_node_22_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_23/cluster_1_node_23_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_21/cluster_10_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194326_YhYZGx


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m396_MA1410_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m408_MA1430_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_24/cluster_1_node_24_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m188_MA1166_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m373_MA1384_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m374_MA1385_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m583_MA2023_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m629_MA1163_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m372_MA1383_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m377_MA1389_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_22/cluster_10_node_22_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m162_MA1071_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m682_UN0039_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m692_UN0050_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m674_UN0027_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m97_MA0983_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m92_MA0977_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m658_UN0002_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m679_UN0036_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m667_UN0016_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m96_MA0982_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_23/cluster_11_node_23_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m278_MA1276_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m102_MA0989_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m90_MA0973_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m661_UN0007_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m100_MA0987_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m124_MA1022_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m95_MA0981_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m696_UN0059_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m697_UN0060_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m636_MA1272_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m277_MA1275_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m437_MA0974_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_24/cluster_11_node_24_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_21/cluster_10_node_21_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_24/cluster_1_node_24_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_24/cluster_1_node_24_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_24/cluster_11_node_24_cat.tf -v 0 -in_format tf -out_format tf -id cluster_11 -name cluster_11 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_24/cluster_11_node_24_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_22/cluster_10_node_22_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_22/cluster_10_node_22_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_23/cluster_11_node_23_cat.tf -v 0 -in_format tf -out_format tf -id cluster_11 -name cluster_11 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_23/cluster_11_node_23_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_24/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194328_KzOp53


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_24/cluster_11_nb_motifs_12.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194328_PAWKwv


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_22/cluster_10_nb_motifs_7.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194328_4Lskp1


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_23/cluster_11_nb_motifs_10.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194328_Fos0SJ


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m135_MA1035_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m673_UN0026_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m161_MA1067_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m177_MA1096_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m131_MA1031_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m159_MA1064_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m152_MA1054_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m49_MA0587_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m158_MA1063_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m677_UN0032_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m690_UN0048_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m407_MA1428_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m121_MA1019_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m678_UN0034_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m676_UN0030_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m176_MA1095_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m179_MA1098_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m178_MA1097_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m149_MA1050_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m160_MA1066_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_25/cluster_1_node_25_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m162_MA1071_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m682_UN0039_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m692_UN0050_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m674_UN0027_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m97_MA0983_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m92_MA0977_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m658_UN0002_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m679_UN0036_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m667_UN0016_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m96_MA0982_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m278_MA1276_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m102_MA0989_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m90_MA0973_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m661_UN0007_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m100_MA0987_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m124_MA1022_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m95_MA0981_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m696_UN0059_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m697_UN0060_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m636_MA1272_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m277_MA1275_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m437_MA0974_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_25/cluster_11_node_25_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_24/cluster_1_node_24_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_24/cluster_11_node_24_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_22/cluster_10_node_22_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_23/cluster_11_node_23_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_25/cluster_1_node_25_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_25/cluster_1_node_25_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_25/cluster_11_node_25_cat.tf -v 0 -in_format tf -out_format tf -id cluster_11 -name cluster_11 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_25/cluster_11_node_25_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_25/cluster_1_nb_motifs_20.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194329_a4IBvL


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_25/cluster_11_nb_motifs_22.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194329_AzZkt6


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m650_MA1665_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m651_MA1666_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m579_MA2019_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m580_MA2020_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_23/cluster_10_node_23_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_25/cluster_1_node_25_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_23/cluster_10_node_23_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_23/cluster_10_node_23_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_25/cluster_11_node_25_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_23/cluster_10_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194329_Jxbah2


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m563_MA1828_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m292_MA1290_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m288_MA1286_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m284_MA1282_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m291_MA1289_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_26/cluster_1_node_26_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_23/cluster_10_node_23_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_26/cluster_1_node_26_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_26/cluster_1_node_26_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_26/cluster_1_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194331_K4oYZ4


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m486_MA1747_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m273_MA1269_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m282_MA1280_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_26/cluster_11_node_26_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m376_MA1388_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m474_MA1735_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m665_UN0013_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m703_UN0070_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m710_UN0080_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_25/cluster_10_node_25_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m498_MA1759_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m500_MA1761_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m499_MA1760_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m497_MA1758_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m721_UN0386_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m728_UN0394_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_24/cluster_10_node_24_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m98_MA0984_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m162_MA1071_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m682_UN0039_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m692_UN0050_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m674_UN0027_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m97_MA0983_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m92_MA0977_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m658_UN0002_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m679_UN0036_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m667_UN0016_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m96_MA0982_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m278_MA1276_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m102_MA0989_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m90_MA0973_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m661_UN0007_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m100_MA0987_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m124_MA1022_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m95_MA0981_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m696_UN0059_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m697_UN0060_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m636_MA1272_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m277_MA1275_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m437_MA0974_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_27/cluster_11_node_27_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_26/cluster_1_node_26_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_26/cluster_11_node_26_cat.tf -v 0 -in_format tf -out_format tf -id cluster_11 -name cluster_11 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_26/cluster_11_node_26_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_24/cluster_10_node_24_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_24/cluster_10_node_24_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_25/cluster_10_node_25_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_25/cluster_10_node_25_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_27/cluster_11_node_27_cat.tf -v 0 -in_format tf -out_format tf -id cluster_11 -name cluster_11 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_27/cluster_11_node_27_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_26/cluster_11_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194332_rVoJDG


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_24/cluster_10_nb_motifs_6.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194332_pvVvuN


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_27/cluster_11_nb_motifs_23.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194332_dZnZlG


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_25/cluster_10_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194332_g0FgfG


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_26/cluster_11_node_26_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_27/cluster_11_node_27_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_24/cluster_10_node_24_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_25/cluster_10_node_25_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m187_MA1164_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m189_MA1167_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m645_MA1390_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m190_MA1168_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m630_MA1165_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m644_MA1386_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_26/cluster_10_node_26_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m293_MA1291_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m289_MA1287_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m290_MA1288_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m563_MA1828_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m292_MA1290_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m288_MA1286_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m284_MA1282_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m291_MA1289_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_27/cluster_1_node_27_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m396_MA1410_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m408_MA1430_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m135_MA1035_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m673_UN0026_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m161_MA1067_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m177_MA1096_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m131_MA1031_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m159_MA1064_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m152_MA1054_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m49_MA0587_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m158_MA1063_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m677_UN0032_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m690_UN0048_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m407_MA1428_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m121_MA1019_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m678_UN0034_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m676_UN0030_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m176_MA1095_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m179_MA1098_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m178_MA1097_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m149_MA1050_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m160_MA1066_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_28/cluster_1_node_28_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_26/cluster_10_node_26_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_26/cluster_10_node_26_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_27/cluster_1_node_27_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_27/cluster_1_node_27_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_28/cluster_1_node_28_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_28/cluster_1_node_28_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_26/cluster_10_nb_motifs_6.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194334_c5Dr8e


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_27/cluster_1_nb_motifs_8.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194334_tsCZ0X


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_28/cluster_1_nb_motifs_22.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194334_3awlkC


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m410_MA1706_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m376_MA1388_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m474_MA1735_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m665_UN0013_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m703_UN0070_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m710_UN0080_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_27/cluster_10_node_27_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_26/cluster_10_node_26_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m486_MA1747_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m273_MA1269_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m282_MA1280_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m98_MA0984_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m162_MA1071_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m682_UN0039_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m692_UN0050_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m674_UN0027_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m97_MA0983_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m92_MA0977_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m658_UN0002_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m679_UN0036_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m667_UN0016_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m96_MA0982_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m278_MA1276_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m102_MA0989_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m90_MA0973_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m661_UN0007_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m100_MA0987_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m124_MA1022_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m95_MA0981_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m696_UN0059_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m697_UN0060_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m636_MA1272_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m277_MA1275_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m437_MA0974_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_28/cluster_11_node_28_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m4_MA0053_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m6_MA0064_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m1_MA0020_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m2_MA0021_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m486_MA1747_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m273_MA1269_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m282_MA1280_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m98_MA0984_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m162_MA1071_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m682_UN0039_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m692_UN0050_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m674_UN0027_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m97_MA0983_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m92_MA0977_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m658_UN0002_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m679_UN0036_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m667_UN0016_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m96_MA0982_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m278_MA1276_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m102_MA0989_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m90_MA0973_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m661_UN0007_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m100_MA0987_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m124_MA1022_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m95_MA0981_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m696_UN0059_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m697_UN0060_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m636_MA1272_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m277_MA1275_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m437_MA0974_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_29/cluster_11_node_29_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_27/cluster_1_node_27_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_27/cluster_10_node_27_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_27/cluster_10_node_27_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_28/cluster_1_node_28_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_28/cluster_11_node_28_cat.tf -v 0 -in_format tf -out_format tf -id cluster_11 -name cluster_11 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_28/cluster_11_node_28_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_29/cluster_11_node_29_cat.tf -v 0 -in_format tf -out_format tf -id cluster_11 -name cluster_11 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_29/cluster_11_node_29_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_27/cluster_10_nb_motifs_6.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194335_Q9xZ51


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_28/cluster_11_nb_motifs_26.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194335_nEWVNb


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_29/cluster_11_nb_motifs_30.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194335_jhkwPu


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m188_MA1166_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m373_MA1384_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m374_MA1385_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m583_MA2023_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m629_MA1163_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m372_MA1383_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m377_MA1389_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m187_MA1164_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m189_MA1167_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m645_MA1390_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m190_MA1168_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m630_MA1165_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m644_MA1386_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_28/cluster_10_node_28_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_27/cluster_10_node_27_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_28/cluster_10_node_28_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_28/cluster_10_node_28_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_28/cluster_11_node_28_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_11/merged_consensuses/node_29/cluster_11_node_29_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_28/cluster_10_nb_motifs_13.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194336_KbKQsI


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m293_MA1291_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m289_MA1287_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m290_MA1288_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m563_MA1828_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m292_MA1290_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m288_MA1286_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m284_MA1282_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m291_MA1289_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m396_MA1410_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m408_MA1430_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m135_MA1035_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m673_UN0026_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m161_MA1067_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m177_MA1096_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m131_MA1031_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m159_MA1064_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m152_MA1054_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m49_MA0587_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m158_MA1063_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m677_UN0032_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m690_UN0048_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m407_MA1428_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m121_MA1019_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m678_UN0034_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m676_UN0030_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m176_MA1095_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m179_MA1098_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m178_MA1097_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m149_MA1050_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m160_MA1066_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_29/cluster_1_node_29_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_28/cluster_10_node_28_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_29/cluster_1_node_29_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_29/cluster_1_node_29_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_29/cluster_1_nb_motifs_30.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194337_x8vOra


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_1/merged_consensuses/node_29/cluster_1_node_29_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m652_MA1667_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m649_MA1664_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m720_UN0379_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m498_MA1759_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m500_MA1761_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m499_MA1760_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m497_MA1758_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m721_UN0386_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m728_UN0394_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_29/cluster_10_node_29_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_29/cluster_10_node_29_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_29/cluster_10_node_29_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_29/cluster_10_nb_motifs_9.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194339_jUszdY


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m375_MA1387_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m188_MA1166_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m373_MA1384_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m374_MA1385_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m583_MA2023_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m629_MA1163_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m372_MA1383_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m377_MA1389_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m187_MA1164_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m189_MA1167_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m645_MA1390_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m190_MA1168_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m630_MA1165_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m644_MA1386_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_30/cluster_10_node_30_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_29/cluster_10_node_29_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_30/cluster_10_node_30_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_30/cluster_10_node_30_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_30/cluster_10_nb_motifs_14.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194340_X4OAT3


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_30/cluster_10_node_30_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m452_MA1062_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m453_MA1065_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_12/merged_consensuses/node_1/cluster_12_node_1_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m285_MA1283_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m287_MA1285_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_12/merged_consensuses/node_2/cluster_12_node_2_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m452_MA1062_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m453_MA1065_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m285_MA1283_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m287_MA1285_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_12/merged_consensuses/node_3/cluster_12_node_3_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_12/merged_consensuses/node_1/cluster_12_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_12 -name cluster_12 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_12/merged_consensuses/node_1/cluster_12_node_1_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_12/merged_consensuses/node_2/cluster_12_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_12 -name cluster_12 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_12/merged_consensuses/node_2/cluster_12_node_2_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_12/merged_consensuses/node_3/cluster_12_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_12 -name cluster_12 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_12/merged_consensuses/node_3/cluster_12_node_3_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_12/merged_consensuses/node_1/cluster_12_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194341_Nj3idc


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_12/merged_consensuses/node_2/cluster_12_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194341_cBKpw8


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_12/merged_consensuses/node_3/cluster_12_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194341_1bMxkd


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_12/merged_consensuses/node_1/cluster_12_node_1_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_12/merged_consensuses/node_2/cluster_12_node_2_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_12/merged_consensuses/node_3/cluster_12_node_3_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m650_MA1665_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m651_MA1666_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m579_MA2019_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m580_MA2020_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m375_MA1387_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m188_MA1166_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m373_MA1384_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m374_MA1385_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m583_MA2023_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m629_MA1163_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m372_MA1383_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m377_MA1389_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m187_MA1164_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m189_MA1167_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m645_MA1390_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m190_MA1168_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m630_MA1165_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m644_MA1386_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_31/cluster_10_node_31_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_31/cluster_10_node_31_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_31/cluster_10_node_31_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_31/cluster_10_nb_motifs_18.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194343_7yycYj


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m128_MA1027_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m129_MA1028_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m410_MA1706_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m376_MA1388_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m474_MA1735_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m665_UN0013_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m703_UN0070_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m710_UN0080_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_32/cluster_10_node_32_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_31/cluster_10_node_31_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_32/cluster_10_node_32_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_32/cluster_10_node_32_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_32/cluster_10_nb_motifs_8.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194344_jkgQMw


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m286_MA1284_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m452_MA1062_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m453_MA1065_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m285_MA1283_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m287_MA1285_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_12/merged_consensuses/node_4/cluster_12_node_4_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_12/merged_consensuses/node_4/cluster_12_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_12 -name cluster_12 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_12/merged_consensuses/node_4/cluster_12_node_4_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_32/cluster_10_node_32_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_12/merged_consensuses/node_4/cluster_12_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194344_ujXdFz


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_12/merged_consensuses/node_4/cluster_12_node_4_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m650_MA1665_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m651_MA1666_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m579_MA2019_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m580_MA2020_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m375_MA1387_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m188_MA1166_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m373_MA1384_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m374_MA1385_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m583_MA2023_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m629_MA1163_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m372_MA1383_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m377_MA1389_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m187_MA1164_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m189_MA1167_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m645_MA1390_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m190_MA1168_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m630_MA1165_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m644_MA1386_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m128_MA1027_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m129_MA1028_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m410_MA1706_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m376_MA1388_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m474_MA1735_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m665_UN0013_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m703_UN0070_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m710_UN0080_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_33/cluster_10_node_33_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_33/cluster_10_node_33_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_33/cluster_10_node_33_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_33/cluster_10_nb_motifs_26.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194347_9Wlclj


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m565_MA1830_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m650_MA1665_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m651_MA1666_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m579_MA2019_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m580_MA2020_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m375_MA1387_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m188_MA1166_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m373_MA1384_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m374_MA1385_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m583_MA2023_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m629_MA1163_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m372_MA1383_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m377_MA1389_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m187_MA1164_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m189_MA1167_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m645_MA1390_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m190_MA1168_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m630_MA1165_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m644_MA1386_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m128_MA1027_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m129_MA1028_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m410_MA1706_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m376_MA1388_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m474_MA1735_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m665_UN0013_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m703_UN0070_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m710_UN0080_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_34/cluster_10_node_34_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_33/cluster_10_node_33_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_34/cluster_10_node_34_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_34/cluster_10_node_34_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_34/cluster_10_nb_motifs_27.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194348_kFKW30


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m358_MA1369_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m364_MA1375_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_1/cluster_13_node_1_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m435_MA0110_3_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m612_MA2052_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_2/cluster_13_node_2_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m632_MA1210_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m633_MA1213_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_3/cluster_13_node_3_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_2/cluster_13_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_2/cluster_13_node_2_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_1/cluster_13_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_1/cluster_13_node_1_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_3/cluster_13_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_3/cluster_13_node_3_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_34/cluster_10_node_34_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_2/cluster_13_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194348_SL57aW


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_1/cluster_13_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194348_EwOiIz


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_3/cluster_13_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194348_kX94xi


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_2/cluster_13_node_2_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_1/cluster_13_node_1_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_3/cluster_13_node_3_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m496_MA1757_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m358_MA1369_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m364_MA1375_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_4/cluster_13_node_4_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_4/cluster_13_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_4/cluster_13_node_4_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m652_MA1667_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m649_MA1664_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m720_UN0379_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m498_MA1759_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m500_MA1761_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m499_MA1760_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m497_MA1758_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m721_UN0386_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m728_UN0394_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m565_MA1830_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m650_MA1665_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m651_MA1666_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m579_MA2019_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m580_MA2020_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m375_MA1387_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m188_MA1166_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m373_MA1384_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m374_MA1385_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m583_MA2023_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m629_MA1163_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m372_MA1383_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m377_MA1389_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m187_MA1164_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m189_MA1167_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m645_MA1390_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m190_MA1168_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m630_MA1165_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m644_MA1386_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m128_MA1027_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m129_MA1028_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m410_MA1706_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m376_MA1388_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m474_MA1735_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m665_UN0013_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m703_UN0070_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m710_UN0080_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_35/cluster_10_node_35_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_35/cluster_10_node_35_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_35/cluster_10_node_35_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_4/cluster_13_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194351_itJHvB


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_35/cluster_10_nb_motifs_36.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194352_qNLLWN


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m229_MA1209_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m231_MA1212_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_5/cluster_13_node_5_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_4/cluster_13_node_4_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_5/cluster_13_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_5/cluster_13_node_5_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_10/merged_consensuses/node_35/cluster_10_node_35_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_5/cluster_13_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194352_GheXTx


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m233_MA1215_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m229_MA1209_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m231_MA1212_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_6/cluster_13_node_6_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_5/cluster_13_node_5_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_6/cluster_13_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_6/cluster_13_node_6_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_6/cluster_13_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194353_CaCtgK


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m55_MA0933_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m56_MA0934_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_7/cluster_13_node_7_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_6/cluster_13_node_6_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_7/cluster_13_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_7/cluster_13_node_7_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_7/cluster_13_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194354_z9blhA


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m230_MA1211_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m233_MA1215_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m229_MA1209_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m231_MA1212_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_8/cluster_13_node_8_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_7/cluster_13_node_7_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_8/cluster_13_node_8_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_8/cluster_13_node_8_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_8/cluster_13_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194355_Q0JGLt


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m180_MA1156_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m182_MA1158_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_1/cluster_14_node_1_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m363_MA1374_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m735_UN0402_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_3/cluster_14_node_3_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m181_MA1157_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m180_MA1156_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m182_MA1158_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_2/cluster_14_node_2_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m660_UN0005_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m704_UN0072_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_9/cluster_13_node_9_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_8/cluster_13_node_8_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_1/cluster_14_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_14 -name cluster_14 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_1/cluster_14_node_1_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_2/cluster_14_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_14 -name cluster_14 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_2/cluster_14_node_2_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_9/cluster_13_node_9_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_9/cluster_13_node_9_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_3/cluster_14_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_14 -name cluster_14 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_3/cluster_14_node_3_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_2/cluster_14_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194357_k3U2i0


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_1/cluster_14_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194356_CgwWIt


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_9/cluster_13_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194357_xyeko7


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_3/cluster_14_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194357_E8AlZY


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m542_MA1807_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m746_UN0413_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_10/cluster_13_node_10_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_1/cluster_14_node_1_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_9/cluster_13_node_9_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_10/cluster_13_node_10_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_10/cluster_13_node_10_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_2/cluster_14_node_2_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_3/cluster_14_node_3_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_10/cluster_13_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194357_cHwFce


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m126_MA1024_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m393_MA1406_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_11/cluster_13_node_11_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_10/cluster_13_node_10_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_11/cluster_13_node_11_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_11/cluster_13_node_11_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_11/cluster_13_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194358_V40Mk0


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m360_MA1371_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m731_UN0398_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_5/cluster_14_node_5_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m184_MA1160_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m181_MA1157_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m180_MA1156_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m182_MA1158_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_4/cluster_14_node_4_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m363_MA1374_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m735_UN0402_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m360_MA1371_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m731_UN0398_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_6/cluster_14_node_6_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m693_UN0051_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m126_MA1024_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m393_MA1406_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_12/cluster_13_node_12_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_11/cluster_13_node_11_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_5/cluster_14_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_14 -name cluster_14 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_5/cluster_14_node_5_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_4/cluster_14_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_14 -name cluster_14 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_4/cluster_14_node_4_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_6/cluster_14_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_14 -name cluster_14 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_6/cluster_14_node_6_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_12/cluster_13_node_12_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_12/cluster_13_node_12_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_5/cluster_14_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194359_MsqXIj


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_4/cluster_14_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194359_nwF1UO


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_6/cluster_14_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194359_JVKLMc


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_12/cluster_13_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194400_SK22sl


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m72_MA0951_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m73_MA0952_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_13/cluster_13_node_13_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_5/cluster_14_node_5_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_4/cluster_14_node_4_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_6/cluster_14_node_6_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_12/cluster_13_node_12_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_13/cluster_13_node_13_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_13/cluster_13_node_13_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_13/cluster_13_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194401_vVKEYb


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_13/cluster_13_node_13_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m359_MA1370_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m362_MA1373_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_7/cluster_14_node_7_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m280_MA1278_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m283_MA1281_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_8/cluster_14_node_8_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_7/cluster_14_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_14 -name cluster_14 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_7/cluster_14_node_7_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_8/cluster_14_node_8_cat.tf -v 0 -in_format tf -out_format tf -id cluster_14 -name cluster_14 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_8/cluster_14_node_8_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_7/cluster_14_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194402_3iLiS1


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_8/cluster_14_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194403_H7teiU


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m363_MA1374_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m735_UN0402_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m360_MA1371_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m731_UN0398_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m359_MA1370_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m362_MA1373_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_9/cluster_14_node_9_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m103_MA0990_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m496_MA1757_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m358_MA1369_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m364_MA1375_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_14/cluster_13_node_14_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_7/cluster_14_node_7_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_9/cluster_14_node_9_cat.tf -v 0 -in_format tf -out_format tf -id cluster_14 -name cluster_14 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_9/cluster_14_node_9_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_14/cluster_13_node_14_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_14/cluster_13_node_14_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_8/cluster_14_node_8_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_14/cluster_13_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194403_KQ50e4


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_9/cluster_14_nb_motifs_6.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194403_TMMa32


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_9/cluster_14_node_9_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_14/cluster_13_node_14_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m439_MA1265_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m571_MA2011_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_2/cluster_15_node_2_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m109_MA1007_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m125_MA1023_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_1/cluster_15_node_1_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m238_MA1223_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m243_MA1230_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_3/cluster_15_node_3_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m274_MA1270_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m281_MA1279_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_10/cluster_14_node_10_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m184_MA1160_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m181_MA1157_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m180_MA1156_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m182_MA1158_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m363_MA1374_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m735_UN0402_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m360_MA1371_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m731_UN0398_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m359_MA1370_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m362_MA1373_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_11/cluster_14_node_11_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_2/cluster_15_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_2/cluster_15_node_2_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_1/cluster_15_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_1/cluster_15_node_1_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_11/cluster_14_node_11_cat.tf -v 0 -in_format tf -out_format tf -id cluster_14 -name cluster_14 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_11/cluster_14_node_11_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_3/cluster_15_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_3/cluster_15_node_3_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_10/cluster_14_node_10_cat.tf -v 0 -in_format tf -out_format tf -id cluster_14 -name cluster_14 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_10/cluster_14_node_10_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_2/cluster_15_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194405_HxYALx


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_1/cluster_15_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194406_tmD4Gp


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_11/cluster_14_nb_motifs_10.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194406_4LxI7x


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_10/cluster_14_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194406_jgdcbq


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_3/cluster_15_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194406_HQhyMC


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m385_MA0954_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m435_MA0110_3_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m612_MA2052_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_15/cluster_13_node_15_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_2/cluster_15_node_2_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_10/cluster_14_node_10_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_1/cluster_15_node_1_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_15/cluster_13_node_15_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_15/cluster_13_node_15_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_3/cluster_15_node_3_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_11/cluster_14_node_11_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_15/cluster_13_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194407_6RjLbd


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m737_UN0404_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m757_UN0426_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_12/cluster_14_node_12_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_15/cluster_13_node_15_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_12/cluster_14_node_12_cat.tf -v 0 -in_format tf -out_format tf -id cluster_14 -name cluster_14 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_12/cluster_14_node_12_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_12/cluster_14_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194408_xjUQbV


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m404_MA1424_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m422_MA1679_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_4/cluster_15_node_4_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m99_MA0986_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m109_MA1007_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m125_MA1023_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_5/cluster_15_node_5_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m416_MA1670_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m441_MA1227_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_6/cluster_15_node_6_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m276_MA1274_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m274_MA1270_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m281_MA1279_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_13/cluster_14_node_13_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_12/cluster_14_node_12_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_4/cluster_15_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_4/cluster_15_node_4_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_5/cluster_15_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_5/cluster_15_node_5_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_6/cluster_15_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_6/cluster_15_node_6_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_13/cluster_14_node_13_cat.tf -v 0 -in_format tf -out_format tf -id cluster_14 -name cluster_14 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_13/cluster_14_node_13_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_4/cluster_15_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194409_AJ1dii


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_6/cluster_15_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194408_Y8wZPI


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_5/cluster_15_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194409_cgNQvM


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_13/cluster_14_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194409_vMIFLt


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m275_MA1273_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m279_MA1277_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_14/cluster_14_node_14_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_4/cluster_15_node_4_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_5/cluster_15_node_5_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_6/cluster_15_node_6_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_13/cluster_14_node_13_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_14/cluster_14_node_14_cat.tf -v 0 -in_format tf -out_format tf -id cluster_14 -name cluster_14 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_14/cluster_14_node_14_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_14/cluster_14_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194410_9kixLe


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_14/cluster_14_node_14_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m235_MA1220_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m404_MA1424_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m422_MA1679_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_7/cluster_15_node_7_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m245_MA1234_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m268_MA1263_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_8/cluster_15_node_8_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m272_MA1268_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m276_MA1274_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m274_MA1270_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m281_MA1279_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_16/cluster_14_node_16_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m183_MA1159_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m184_MA1160_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m181_MA1157_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m180_MA1156_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m182_MA1158_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m363_MA1374_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m735_UN0402_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m360_MA1371_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m731_UN0398_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m359_MA1370_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m362_MA1373_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_15/cluster_14_node_15_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_7/cluster_15_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_7/cluster_15_node_7_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_8/cluster_15_node_8_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_8/cluster_15_node_8_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_16/cluster_14_node_16_cat.tf -v 0 -in_format tf -out_format tf -id cluster_14 -name cluster_14 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_16/cluster_14_node_16_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_15/cluster_14_node_15_cat.tf -v 0 -in_format tf -out_format tf -id cluster_14 -name cluster_14 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_15/cluster_14_node_15_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_7/cluster_15_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194412_tVbcIl


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_8/cluster_15_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194412_O1a9LZ


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_16/cluster_14_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194412_WsP0Ug


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_15/cluster_14_nb_motifs_11.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194412_fnxyHf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m271_MA1267_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m280_MA1278_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m283_MA1281_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_17/cluster_14_node_17_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m71_MA0950_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m72_MA0951_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m73_MA0952_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_16/cluster_13_node_16_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_7/cluster_15_node_7_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_16/cluster_13_node_16_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_16/cluster_13_node_16_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_17/cluster_14_node_17_cat.tf -v 0 -in_format tf -out_format tf -id cluster_14 -name cluster_14 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_17/cluster_14_node_17_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_15/cluster_14_node_15_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_8/cluster_15_node_8_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_16/cluster_14_node_16_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_16/cluster_13_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194413_JuEDtI


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_17/cluster_14_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194413_66UaK8


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_17/cluster_14_node_17_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_16/cluster_13_node_16_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m63_MA0942_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m64_MA0943_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_9/cluster_15_node_9_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m132_MA1032_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m88_MA0971_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_10/cluster_15_node_10_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m260_MA1253_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m634_MA1219_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_11/cluster_15_node_11_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_10/cluster_15_node_10_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_10/cluster_15_node_10_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_9/cluster_15_node_9_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_9/cluster_15_node_9_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_11/cluster_15_node_11_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_11/cluster_15_node_11_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_9/cluster_15_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194415_CvMRZL


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_10/cluster_15_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194415_iWPrW5


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_11/cluster_15_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194415_VfnpbY


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m737_UN0404_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m757_UN0426_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m275_MA1273_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m279_MA1277_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_18/cluster_14_node_18_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m559_MA1824_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m230_MA1211_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m233_MA1215_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m229_MA1209_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m231_MA1212_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_17/cluster_13_node_17_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m272_MA1268_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m276_MA1274_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m274_MA1270_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m281_MA1279_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m737_UN0404_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m757_UN0426_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m275_MA1273_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m279_MA1277_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_19/cluster_14_node_19_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_9/cluster_15_node_9_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_10/cluster_15_node_10_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_11/cluster_15_node_11_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_17/cluster_13_node_17_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_17/cluster_13_node_17_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_19/cluster_14_node_19_cat.tf -v 0 -in_format tf -out_format tf -id cluster_14 -name cluster_14 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_19/cluster_14_node_19_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_18/cluster_14_node_18_cat.tf -v 0 -in_format tf -out_format tf -id cluster_14 -name cluster_14 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_18/cluster_14_node_18_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_17/cluster_13_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194416_YwrpQY


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_19/cluster_14_nb_motifs_8.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194416_9SzSxu


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_18/cluster_14_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194416_eb3AF8


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m531_MA1794_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m183_MA1159_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m184_MA1160_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m181_MA1157_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m180_MA1156_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m182_MA1158_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m363_MA1374_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m735_UN0402_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m360_MA1371_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m731_UN0398_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m359_MA1370_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m362_MA1373_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_20/cluster_14_node_20_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_17/cluster_13_node_17_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_18/cluster_14_node_18_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_20/cluster_14_node_20_cat.tf -v 0 -in_format tf -out_format tf -id cluster_14 -name cluster_14 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_20/cluster_14_node_20_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_19/cluster_14_node_19_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_20/cluster_14_nb_motifs_12.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194417_q51Vmc


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m443_MA0995_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m572_MA2012_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_12/cluster_15_node_12_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m440_MA1233_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m491_MA1752_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_13/cluster_15_node_13_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m250_MA1241_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m264_MA1259_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_14/cluster_15_node_14_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m434_MA1327_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m542_MA1807_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m746_UN0413_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_18/cluster_13_node_18_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m614_MA0008_3_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m632_MA1210_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m633_MA1213_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_19/cluster_13_node_19_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_20/cluster_14_node_20_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_12/cluster_15_node_12_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_12/cluster_15_node_12_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_18/cluster_13_node_18_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_18/cluster_13_node_18_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_14/cluster_15_node_14_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_14/cluster_15_node_14_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_19/cluster_13_node_19_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_19/cluster_13_node_19_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_13/cluster_15_node_13_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_13/cluster_15_node_13_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_18/cluster_13_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194418_P20kG7


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_14/cluster_15_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194418_HRo9tu


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_13/cluster_15_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194418_eXFFQI


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_19/cluster_13_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194418_cQbQBR


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_12/cluster_15_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194418_qg4ZDF


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_18/cluster_13_node_18_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_13/cluster_15_node_13_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_14/cluster_15_node_14_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_19/cluster_13_node_19_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_12/cluster_15_node_12_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m54_MA0932_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m55_MA0933_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m56_MA0934_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_20/cluster_13_node_20_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_20/cluster_13_node_20_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_20/cluster_13_node_20_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_20/cluster_13_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194420_dn3o3v


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m442_MA1238_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m439_MA1265_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m571_MA2011_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_15/cluster_15_node_15_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m465_MA1692_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m416_MA1670_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m441_MA1227_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_16/cluster_15_node_16_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m271_MA1267_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m280_MA1278_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m283_MA1281_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m272_MA1268_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m276_MA1274_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m274_MA1270_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m281_MA1279_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m737_UN0404_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m757_UN0426_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m275_MA1273_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m279_MA1277_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_21/cluster_14_node_21_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_15/cluster_15_node_15_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_15/cluster_15_node_15_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_16/cluster_15_node_16_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_16/cluster_15_node_16_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_21/cluster_14_node_21_cat.tf -v 0 -in_format tf -out_format tf -id cluster_14 -name cluster_14 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_21/cluster_14_node_21_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_20/cluster_13_node_20_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_16/cluster_15_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194421_oVb3JQ


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_15/cluster_15_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194421_IVIUHu


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_21/cluster_14_nb_motifs_11.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194421_KIsIWM


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m242_MA1229_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m440_MA1233_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m491_MA1752_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_17/cluster_15_node_17_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m74_MA0953_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m693_UN0051_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m126_MA1024_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m393_MA1406_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_21/cluster_13_node_21_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m531_MA1794_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m183_MA1159_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m184_MA1160_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m181_MA1157_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m180_MA1156_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m182_MA1158_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m363_MA1374_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m735_UN0402_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m360_MA1371_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m731_UN0398_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m359_MA1370_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m362_MA1373_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m271_MA1267_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m280_MA1278_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m283_MA1281_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m272_MA1268_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m276_MA1274_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m274_MA1270_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m281_MA1279_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m737_UN0404_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m757_UN0426_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m275_MA1273_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m279_MA1277_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_22/cluster_14_node_22_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_16/cluster_15_node_16_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_21/cluster_14_node_21_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_15/cluster_15_node_15_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_17/cluster_15_node_17_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_17/cluster_15_node_17_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_21/cluster_13_node_21_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_21/cluster_13_node_21_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_22/cluster_14_node_22_cat.tf -v 0 -in_format tf -out_format tf -id cluster_14 -name cluster_14 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_22/cluster_14_node_22_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_21/cluster_13_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194422_9Y1fDi


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_17/cluster_15_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194422_72P4Oy


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_22/cluster_14_nb_motifs_23.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194422_DlUE55


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m457_MA1329_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m434_MA1327_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m542_MA1807_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m746_UN0413_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_23/cluster_13_node_23_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m219_MA1198_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m385_MA0954_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m435_MA0110_3_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m612_MA2052_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_22/cluster_13_node_22_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_17/cluster_15_node_17_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_21/cluster_13_node_21_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_22/cluster_13_node_22_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_22/cluster_13_node_22_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_23/cluster_13_node_23_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_23/cluster_13_node_23_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_14/merged_consensuses/node_22/cluster_14_node_22_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_22/cluster_13_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194423_gEH0fy


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_23/cluster_13_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194423_I8fX60


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_23/cluster_13_node_23_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_22/cluster_13_node_22_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m234_MA1218_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m415_MA1669_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_18/cluster_15_node_18_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_18/cluster_15_node_18_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_18/cluster_15_node_18_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_18/cluster_15_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194425_xxwbeJ


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m235_MA1220_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m404_MA1424_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m422_MA1679_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m260_MA1253_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m634_MA1219_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_19/cluster_15_node_19_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_18/cluster_15_node_18_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_19/cluster_15_node_19_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_19/cluster_15_node_19_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_19/cluster_15_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194426_DiBfzl


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m559_MA1824_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m230_MA1211_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m233_MA1215_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m229_MA1209_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m231_MA1212_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m614_MA0008_3_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m632_MA1210_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m633_MA1213_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_24/cluster_13_node_24_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_19/cluster_15_node_19_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_24/cluster_13_node_24_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_24/cluster_13_node_24_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_24/cluster_13_nb_motifs_8.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194427_YOpTT6


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m252_MA1243_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m365_MA1376_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_21/cluster_15_node_21_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m238_MA1223_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m243_MA1230_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m250_MA1241_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m264_MA1259_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_20/cluster_15_node_20_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_24/cluster_13_node_24_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_20/cluster_15_node_20_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_20/cluster_15_node_20_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_21/cluster_15_node_21_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_21/cluster_15_node_21_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_20/cluster_15_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194428_8wWl2v


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_21/cluster_15_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194428_No9pLo


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m729_UN0396_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m748_UN0415_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_25/cluster_13_node_25_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_20/cluster_15_node_20_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_21/cluster_15_node_21_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_25/cluster_13_node_25_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_25/cluster_13_node_25_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_25/cluster_13_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194429_1siqY6


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m467_MA1694_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m471_MA1698_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_22/cluster_15_node_22_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_25/cluster_13_node_25_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_22/cluster_15_node_22_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_22/cluster_15_node_22_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_22/cluster_15_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194430_FgFizR


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m689_UN0047_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m727_UN0393_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_1/cluster_16_node_1_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m210_MA1189_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m216_MA1195_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_2/cluster_16_node_2_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m448_MA1398_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m591_MA2031_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_3/cluster_16_node_3_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m93_MA0978_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m63_MA0942_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m64_MA0943_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_23/cluster_15_node_23_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m487_MA1748_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m132_MA1032_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m88_MA0971_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_24/cluster_15_node_24_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_1/cluster_16_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_16 -name cluster_16 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_1/cluster_16_node_1_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_2/cluster_16_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_16 -name cluster_16 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_2/cluster_16_node_2_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_3/cluster_16_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_16 -name cluster_16 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_3/cluster_16_node_3_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_22/cluster_15_node_22_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_23/cluster_15_node_23_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_23/cluster_15_node_23_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_24/cluster_15_node_24_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_24/cluster_15_node_24_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_1/cluster_16_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194430_iaFlb1


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_3/cluster_16_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194431_NDkSfW


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_2/cluster_16_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194431_9fHzoI


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_23/cluster_15_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194431_f58YTn


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_24/cluster_15_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194431_e2YBWl


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_1/cluster_16_node_1_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_3/cluster_16_node_3_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_2/cluster_16_node_2_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m71_MA0950_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m72_MA0951_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m73_MA0952_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m74_MA0953_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m693_UN0051_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m126_MA1024_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m393_MA1406_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_26/cluster_13_node_26_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m219_MA1198_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m385_MA0954_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m435_MA0110_3_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m612_MA2052_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m559_MA1824_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m230_MA1211_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m233_MA1215_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m229_MA1209_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m231_MA1212_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m614_MA0008_3_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m632_MA1210_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m633_MA1213_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_27/cluster_13_node_27_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_23/cluster_15_node_23_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_24/cluster_15_node_24_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_26/cluster_13_node_26_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_26/cluster_13_node_26_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_27/cluster_13_node_27_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_27/cluster_13_node_27_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_26/cluster_13_nb_motifs_7.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194432_MFQ0yM


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_27/cluster_13_nb_motifs_12.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194432_N792ju


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_27/cluster_13_node_27_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_26/cluster_13_node_26_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m560_MA1825_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m562_MA1827_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_4/cluster_16_node_4_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m215_MA1194_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m210_MA1189_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m216_MA1195_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_5/cluster_16_node_5_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m226_MA1206_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m65_MA0944_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_25/cluster_15_node_25_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m451_MA0980_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m443_MA0995_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m572_MA2012_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_26/cluster_15_node_26_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m465_MA1692_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m416_MA1670_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m441_MA1227_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m234_MA1218_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m415_MA1669_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_27/cluster_15_node_27_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_5/cluster_16_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_16 -name cluster_16 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_5/cluster_16_node_5_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_4/cluster_16_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_16 -name cluster_16 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_4/cluster_16_node_4_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_25/cluster_15_node_25_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_25/cluster_15_node_25_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_27/cluster_15_node_27_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_27/cluster_15_node_27_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_26/cluster_15_node_26_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_26/cluster_15_node_26_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_5/cluster_16_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194434_Oq6mIC


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_4/cluster_16_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194434_UrsODr


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_25/cluster_15_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194434_gkuHz3


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_27/cluster_15_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194434_BUk2vp


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_26/cluster_15_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194434_lXKTh2


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m380_MA1400_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m764_UN0433_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_6/cluster_16_node_6_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_5/cluster_16_node_5_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_4/cluster_16_node_4_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_6/cluster_16_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_16 -name cluster_16 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_6/cluster_16_node_6_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_27/cluster_15_node_27_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_25/cluster_15_node_25_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_26/cluster_15_node_26_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_6/cluster_16_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194435_RuRtzF


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_6/cluster_16_node_6_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m209_MA1188_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m217_MA1196_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_7/cluster_16_node_7_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m213_MA1192_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m423_MA1681_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_8/cluster_16_node_8_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m767_UN0688_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m242_MA1229_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m440_MA1233_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m491_MA1752_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_28/cluster_15_node_28_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_8/cluster_16_node_8_cat.tf -v 0 -in_format tf -out_format tf -id cluster_16 -name cluster_16 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_8/cluster_16_node_8_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_7/cluster_16_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_16 -name cluster_16 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_7/cluster_16_node_7_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_28/cluster_15_node_28_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_28/cluster_15_node_28_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_8/cluster_16_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194437_eWmx0Z


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_7/cluster_16_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194437_fIpG1Z


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_28/cluster_15_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194437_KJYOTz


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m743_UN0410_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m380_MA1400_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m764_UN0433_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_9/cluster_16_node_9_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m442_MA1238_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m439_MA1265_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m571_MA2011_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m235_MA1220_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m404_MA1424_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m422_MA1679_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m260_MA1253_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m634_MA1219_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_29/cluster_15_node_29_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_8/cluster_16_node_8_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_9/cluster_16_node_9_cat.tf -v 0 -in_format tf -out_format tf -id cluster_16 -name cluster_16 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_9/cluster_16_node_9_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_7/cluster_16_node_7_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_29/cluster_15_node_29_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_29/cluster_15_node_29_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_28/cluster_15_node_28_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_9/cluster_16_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194438_Y5XRI6


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_29/cluster_15_nb_motifs_8.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194438_oPi9kr


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_9/cluster_16_node_9_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_29/cluster_15_node_29_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m708_UN0077_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m689_UN0047_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m727_UN0393_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_10/cluster_16_node_10_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m215_MA1194_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m210_MA1189_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m216_MA1195_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m209_MA1188_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m217_MA1196_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_11/cluster_16_node_11_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_11/cluster_16_node_11_cat.tf -v 0 -in_format tf -out_format tf -id cluster_16 -name cluster_16 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_11/cluster_16_node_11_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_10/cluster_16_node_10_cat.tf -v 0 -in_format tf -out_format tf -id cluster_16 -name cluster_16 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_10/cluster_16_node_10_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_11/cluster_16_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194440_7ldpz4


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_10/cluster_16_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194440_2yM5y9


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m379_MA1397_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m530_MA1793_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_12/cluster_16_node_12_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m660_UN0005_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m704_UN0072_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m54_MA0932_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m55_MA0933_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m56_MA0934_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_29/cluster_13_node_29_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m324_MA1326_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m457_MA1329_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m434_MA1327_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m542_MA1807_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m746_UN0413_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_28/cluster_13_node_28_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_11/cluster_16_node_11_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m110_MA1008_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m668_UN0017_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_30/cluster_15_node_30_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_10/cluster_16_node_10_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_28/cluster_13_node_28_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_28/cluster_13_node_28_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_29/cluster_13_node_29_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_29/cluster_13_node_29_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_12/cluster_16_node_12_cat.tf -v 0 -in_format tf -out_format tf -id cluster_16 -name cluster_16 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_12/cluster_16_node_12_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_30/cluster_15_node_30_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_30/cluster_15_node_30_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_28/cluster_13_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194441_L5CpUN


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_29/cluster_13_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194441_NCU3Z2


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_12/cluster_16_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194441_oAncAz


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_30/cluster_15_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194441_dBd0sO


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m111_MA1009_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m99_MA0986_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m109_MA1007_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m125_MA1023_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_31/cluster_15_node_31_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m467_MA1694_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m471_MA1698_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m465_MA1692_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m416_MA1670_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m441_MA1227_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m234_MA1218_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m415_MA1669_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_32/cluster_15_node_32_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_32/cluster_15_node_32_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_32/cluster_15_node_32_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_31/cluster_15_node_31_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_31/cluster_15_node_31_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_28/cluster_13_node_28_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_12/cluster_16_node_12_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_30/cluster_15_node_30_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_29/cluster_13_node_29_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_32/cluster_15_nb_motifs_7.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194442_IYCoKa


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_31/cluster_15_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194442_Geet7Y


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_32/cluster_15_node_32_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_31/cluster_15_node_31_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m207_MA1186_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m213_MA1192_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m423_MA1681_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_14/cluster_16_node_14_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m743_UN0410_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m380_MA1400_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m764_UN0433_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m215_MA1194_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m210_MA1189_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m216_MA1195_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m209_MA1188_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m217_MA1196_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_13/cluster_16_node_13_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m448_MA1398_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m591_MA2031_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m708_UN0077_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m689_UN0047_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m727_UN0393_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_15/cluster_16_node_15_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m238_MA1223_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m243_MA1230_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m250_MA1241_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m264_MA1259_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m442_MA1238_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m439_MA1265_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m571_MA2011_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m235_MA1220_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m404_MA1424_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m422_MA1679_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m260_MA1253_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m634_MA1219_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_33/cluster_15_node_33_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_15/cluster_16_node_15_cat.tf -v 0 -in_format tf -out_format tf -id cluster_16 -name cluster_16 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_15/cluster_16_node_15_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_14/cluster_16_node_14_cat.tf -v 0 -in_format tf -out_format tf -id cluster_16 -name cluster_16 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_14/cluster_16_node_14_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_13/cluster_16_node_13_cat.tf -v 0 -in_format tf -out_format tf -id cluster_16 -name cluster_16 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_13/cluster_16_node_13_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_33/cluster_15_node_33_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_33/cluster_15_node_33_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_15/cluster_16_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194444_ndiClV


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_13/cluster_16_nb_motifs_8.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194444_dVQxqM


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_14/cluster_16_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194444_3pWgMF


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_33/cluster_15_nb_motifs_12.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194444_L8mGkC


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m734_UN0401_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m103_MA0990_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m496_MA1757_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m358_MA1369_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m364_MA1375_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_31/cluster_13_node_31_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m749_UN0416_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m324_MA1326_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m457_MA1329_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m434_MA1327_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m542_MA1807_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m746_UN0413_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_30/cluster_13_node_30_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_15/cluster_16_node_15_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_14/cluster_16_node_14_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_13/cluster_16_node_13_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_30/cluster_13_node_30_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_30/cluster_13_node_30_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_31/cluster_13_node_31_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_31/cluster_13_node_31_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_33/cluster_15_node_33_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_30/cluster_13_nb_motifs_6.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194445_UJUnhy


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_31/cluster_13_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194445_6SGSi2


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m487_MA1748_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m132_MA1032_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m88_MA0971_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m110_MA1008_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m668_UN0017_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_34/cluster_15_node_34_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_30/cluster_13_node_30_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_31/cluster_13_node_31_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_34/cluster_15_node_34_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_34/cluster_15_node_34_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_34/cluster_15_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194446_zOWaKJ


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_34/cluster_15_node_34_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m560_MA1825_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m562_MA1827_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m448_MA1398_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m591_MA2031_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m708_UN0077_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m689_UN0047_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m727_UN0393_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_16/cluster_16_node_16_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m743_UN0410_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m380_MA1400_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m764_UN0433_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m215_MA1194_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m210_MA1189_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m216_MA1195_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m209_MA1188_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m217_MA1196_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m207_MA1186_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m213_MA1192_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m423_MA1681_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_17/cluster_16_node_17_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m379_MA1397_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m530_MA1793_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m560_MA1825_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m562_MA1827_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m448_MA1398_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m591_MA2031_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m708_UN0077_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m689_UN0047_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m727_UN0393_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_18/cluster_16_node_18_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m729_UN0396_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m748_UN0415_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m71_MA0950_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m72_MA0951_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m73_MA0952_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m74_MA0953_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m693_UN0051_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m126_MA1024_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m393_MA1406_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_32/cluster_13_node_32_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_16/cluster_16_node_16_cat.tf -v 0 -in_format tf -out_format tf -id cluster_16 -name cluster_16 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_16/cluster_16_node_16_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_18/cluster_16_node_18_cat.tf -v 0 -in_format tf -out_format tf -id cluster_16 -name cluster_16 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_18/cluster_16_node_18_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_17/cluster_16_node_17_cat.tf -v 0 -in_format tf -out_format tf -id cluster_16 -name cluster_16 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_17/cluster_16_node_17_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_32/cluster_13_node_32_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_32/cluster_13_node_32_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_16/cluster_16_nb_motifs_7.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194448_NNStpM


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_32/cluster_13_nb_motifs_9.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194448_wh1aE9


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_17/cluster_16_nb_motifs_11.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194448_QUs48s


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_18/cluster_16_nb_motifs_9.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194448_Tgo6GU


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m326_MA1330_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m749_UN0416_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m324_MA1326_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m457_MA1329_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m434_MA1327_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m542_MA1807_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m746_UN0413_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_33/cluster_13_node_33_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m252_MA1243_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m365_MA1376_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m767_UN0688_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m242_MA1229_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m440_MA1233_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m491_MA1752_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_35/cluster_15_node_35_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_16/cluster_16_node_16_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_17/cluster_16_node_17_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_32/cluster_13_node_32_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_18/cluster_16_node_18_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_33/cluster_13_node_33_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_33/cluster_13_node_33_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_35/cluster_15_node_35_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_35/cluster_15_node_35_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_33/cluster_13_nb_motifs_7.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194449_r6wFBS


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_35/cluster_15_nb_motifs_6.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194449_jpUEAm


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m93_MA0978_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m63_MA0942_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m64_MA0943_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m226_MA1206_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m65_MA0944_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_36/cluster_15_node_36_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_33/cluster_13_node_33_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_35/cluster_15_node_35_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_36/cluster_15_node_36_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_36/cluster_15_node_36_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_36/cluster_15_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194450_gcuLlH


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_36/cluster_15_node_36_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m214_MA1193_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m723_UN0389_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_19/cluster_16_node_19_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m711_UN0275_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m747_UN0414_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_34/cluster_13_node_34_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m451_MA0980_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m443_MA0995_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m572_MA2012_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m487_MA1748_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m132_MA1032_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m88_MA0971_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m110_MA1008_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m668_UN0017_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_37/cluster_15_node_37_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_19/cluster_16_node_19_cat.tf -v 0 -in_format tf -out_format tf -id cluster_16 -name cluster_16 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_19/cluster_16_node_19_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_34/cluster_13_node_34_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_34/cluster_13_node_34_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_37/cluster_15_node_37_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_37/cluster_15_node_37_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_19/cluster_16_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194452_iAFSmS


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_34/cluster_13_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194452_8EoMwg


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_37/cluster_15_nb_motifs_8.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194452_dGKWqn


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m743_UN0410_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m380_MA1400_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m764_UN0433_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m215_MA1194_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m210_MA1189_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m216_MA1195_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m209_MA1188_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m217_MA1196_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m207_MA1186_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m213_MA1192_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m423_MA1681_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m379_MA1397_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m530_MA1793_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m560_MA1825_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m562_MA1827_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m448_MA1398_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m591_MA2031_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m708_UN0077_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m689_UN0047_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m727_UN0393_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_20/cluster_16_node_20_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m214_MA1193_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m723_UN0389_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m743_UN0410_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m380_MA1400_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m764_UN0433_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m215_MA1194_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m210_MA1189_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m216_MA1195_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m209_MA1188_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m217_MA1196_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m207_MA1186_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m213_MA1192_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m423_MA1681_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m379_MA1397_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m530_MA1793_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m560_MA1825_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m562_MA1827_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m448_MA1398_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m591_MA2031_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m708_UN0077_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m689_UN0047_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m727_UN0393_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_21/cluster_16_node_21_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m219_MA1198_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m385_MA0954_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m435_MA0110_3_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m612_MA2052_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m559_MA1824_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m230_MA1211_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m233_MA1215_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m229_MA1209_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m231_MA1212_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m614_MA0008_3_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m632_MA1210_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m633_MA1213_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m729_UN0396_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m748_UN0415_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m71_MA0950_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m72_MA0951_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m73_MA0952_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m74_MA0953_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m693_UN0051_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m126_MA1024_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m393_MA1406_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_35/cluster_13_node_35_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_19/cluster_16_node_19_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m581_MA2021_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m245_MA1234_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m268_MA1263_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_38/cluster_15_node_38_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m238_MA1223_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m243_MA1230_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m250_MA1241_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m264_MA1259_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m442_MA1238_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m439_MA1265_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m571_MA2011_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m235_MA1220_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m404_MA1424_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m422_MA1679_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m260_MA1253_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m634_MA1219_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m252_MA1243_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m365_MA1376_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m767_UN0688_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m242_MA1229_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m440_MA1233_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m491_MA1752_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_39/cluster_15_node_39_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_34/cluster_13_node_34_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_20/cluster_16_node_20_cat.tf -v 0 -in_format tf -out_format tf -id cluster_16 -name cluster_16 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_20/cluster_16_node_20_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_37/cluster_15_node_37_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_21/cluster_16_node_21_cat.tf -v 0 -in_format tf -out_format tf -id cluster_16 -name cluster_16 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_21/cluster_16_node_21_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_35/cluster_13_node_35_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_35/cluster_13_node_35_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_38/cluster_15_node_38_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_38/cluster_15_node_38_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_39/cluster_15_node_39_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_39/cluster_15_node_39_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_20/cluster_16_nb_motifs_20.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194453_aC1193


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_38/cluster_15_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194453_nm0KcL


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_21/cluster_16_nb_motifs_22.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194453_aLi0xL


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_35/cluster_13_nb_motifs_21.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194453_sTu9dl


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_39/cluster_15_nb_motifs_18.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194453_GFsnTo


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_20/cluster_16_node_20_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_35/cluster_13_node_35_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_38/cluster_15_node_38_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_21/cluster_16_node_21_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_39/cluster_15_node_39_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m751_UN0418_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m214_MA1193_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m723_UN0389_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m743_UN0410_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m380_MA1400_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m764_UN0433_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m215_MA1194_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m210_MA1189_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m216_MA1195_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m209_MA1188_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m217_MA1196_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m207_MA1186_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m213_MA1192_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m423_MA1681_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m379_MA1397_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m530_MA1793_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m560_MA1825_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m562_MA1827_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m448_MA1398_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m591_MA2031_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m708_UN0077_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m689_UN0047_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m727_UN0393_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_22/cluster_16_node_22_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m734_UN0401_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m103_MA0990_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m496_MA1757_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m358_MA1369_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m364_MA1375_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m326_MA1330_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m749_UN0416_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m324_MA1326_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m457_MA1329_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m434_MA1327_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m542_MA1807_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m746_UN0413_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_36/cluster_13_node_36_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_22/cluster_16_node_22_cat.tf -v 0 -in_format tf -out_format tf -id cluster_16 -name cluster_16 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_22/cluster_16_node_22_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_36/cluster_13_node_36_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_36/cluster_13_node_36_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_22/cluster_16_nb_motifs_23.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194455_iPyjUk


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_36/cluster_13_nb_motifs_12.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194455_exm0dK


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m111_MA1009_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m99_MA0986_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m109_MA1007_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m125_MA1023_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m451_MA0980_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m443_MA0995_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m572_MA2012_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m487_MA1748_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m132_MA1032_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m88_MA0971_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m110_MA1008_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m668_UN0017_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_40/cluster_15_node_40_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_40/cluster_15_node_40_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_40/cluster_15_node_40_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_16/merged_consensuses/node_22/cluster_16_node_22_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_36/cluster_13_node_36_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_40/cluster_15_nb_motifs_12.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194456_nBnFBV


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m467_MA1694_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m471_MA1698_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m465_MA1692_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m416_MA1670_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m441_MA1227_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m234_MA1218_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m415_MA1669_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m238_MA1223_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m243_MA1230_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m250_MA1241_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m264_MA1259_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m442_MA1238_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m439_MA1265_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m571_MA2011_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m235_MA1220_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m404_MA1424_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m422_MA1679_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m260_MA1253_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m634_MA1219_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m252_MA1243_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m365_MA1376_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m767_UN0688_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m242_MA1229_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m440_MA1233_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m491_MA1752_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_41/cluster_15_node_41_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_40/cluster_15_node_40_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_41/cluster_15_node_41_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_41/cluster_15_node_41_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_41/cluster_15_nb_motifs_25.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194457_yvBO0q


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_41/cluster_15_node_41_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m325_MA1328_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m734_UN0401_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m103_MA0990_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m496_MA1757_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m358_MA1369_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m364_MA1375_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m326_MA1330_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m749_UN0416_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m324_MA1326_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m457_MA1329_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m434_MA1327_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m542_MA1807_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m746_UN0413_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_37/cluster_13_node_37_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m93_MA0978_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m63_MA0942_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m64_MA0943_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m226_MA1206_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m65_MA0944_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m111_MA1009_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m99_MA0986_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m109_MA1007_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m125_MA1023_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m451_MA0980_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m443_MA0995_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m572_MA2012_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m487_MA1748_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m132_MA1032_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m88_MA0971_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m110_MA1008_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m668_UN0017_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_42/cluster_15_node_42_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_37/cluster_13_node_37_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_37/cluster_13_node_37_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_42/cluster_15_node_42_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_42/cluster_15_node_42_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_37/cluster_13_nb_motifs_13.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194500_XpbHtT


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_42/cluster_15_nb_motifs_17.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194500_SqI4St


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_37/cluster_13_node_37_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m258_MA1251_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m263_MA1258_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_43/cluster_15_node_43_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_42/cluster_15_node_42_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_43/cluster_15_node_43_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_43/cluster_15_node_43_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_43/cluster_15_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194501_LwnyrE


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_43/cluster_15_node_43_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m147_MA1048_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m93_MA0978_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m63_MA0942_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m64_MA0943_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m226_MA1206_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m65_MA0944_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m111_MA1009_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m99_MA0986_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m109_MA1007_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m125_MA1023_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m451_MA0980_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m443_MA0995_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m572_MA2012_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m487_MA1748_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m132_MA1032_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m88_MA0971_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m110_MA1008_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m668_UN0017_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_44/cluster_15_node_44_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_44/cluster_15_node_44_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_44/cluster_15_node_44_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_44/cluster_15_nb_motifs_18.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194504_887IBR


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m557_MA1822_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m570_MA1835_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_1/cluster_17_node_1_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m638_MA0577_3_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m639_MA1322_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_2/cluster_17_node_2_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m153_MA1056_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m391_MA1059_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_3/cluster_17_node_3_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m548_MA1813_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m711_UN0275_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m747_UN0414_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_38/cluster_13_node_38_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_2/cluster_17_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_17 -name cluster_17 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_2/cluster_17_node_2_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_1/cluster_17_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_17 -name cluster_17 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_1/cluster_17_node_1_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_3/cluster_17_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_17 -name cluster_17 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_3/cluster_17_node_3_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_38/cluster_13_node_38_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_38/cluster_13_node_38_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_44/cluster_15_node_44_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_1/cluster_17_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194505_Od3kdG


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_3/cluster_17_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194505_7mni7a


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_2/cluster_17_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194505_DIyQgi


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_38/cluster_13_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194505_2h188H


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_1/cluster_17_node_1_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_2/cluster_17_node_2_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_3/cluster_17_node_3_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m112_MA1010_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m467_MA1694_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m471_MA1698_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m465_MA1692_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m416_MA1670_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m441_MA1227_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m234_MA1218_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m415_MA1669_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m238_MA1223_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m243_MA1230_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m250_MA1241_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m264_MA1259_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m442_MA1238_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m439_MA1265_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m571_MA2011_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m235_MA1220_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m404_MA1424_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m422_MA1679_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m260_MA1253_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m634_MA1219_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m252_MA1243_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m365_MA1376_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m767_UN0688_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m242_MA1229_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m440_MA1233_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m491_MA1752_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_45/cluster_15_node_45_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_38/cluster_13_node_38_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_45/cluster_15_node_45_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_45/cluster_15_node_45_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_45/cluster_15_nb_motifs_26.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194506_c9i9Eq


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m219_MA1198_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m385_MA0954_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m435_MA0110_3_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m612_MA2052_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m559_MA1824_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m230_MA1211_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m233_MA1215_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m229_MA1209_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m231_MA1212_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m614_MA0008_3_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m632_MA1210_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m633_MA1213_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m729_UN0396_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m748_UN0415_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m71_MA0950_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m72_MA0951_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m73_MA0952_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m74_MA0953_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m693_UN0051_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m126_MA1024_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m393_MA1406_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m325_MA1328_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m734_UN0401_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m103_MA0990_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m496_MA1757_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m358_MA1369_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m364_MA1375_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m326_MA1330_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m749_UN0416_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m324_MA1326_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m457_MA1329_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m434_MA1327_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m542_MA1807_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m746_UN0413_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_39/cluster_13_node_39_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_39/cluster_13_node_39_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_39/cluster_13_node_39_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_45/cluster_15_node_45_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m387_MA0586_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m153_MA1056_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m391_MA1059_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_4/cluster_17_node_4_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m154_MA1057_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m156_MA1060_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_6/cluster_17_node_6_cat.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_39/cluster_13_nb_motifs_34.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194507_lBtoK8


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m320_MA1321_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m535_MA1799_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_5/cluster_17_node_5_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_6/cluster_17_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_17 -name cluster_17 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_6/cluster_17_node_6_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_4/cluster_17_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_17 -name cluster_17 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_4/cluster_17_node_4_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m548_MA1813_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m711_UN0275_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m747_UN0414_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m219_MA1198_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m385_MA0954_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m435_MA0110_3_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m612_MA2052_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m559_MA1824_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m230_MA1211_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m233_MA1215_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m229_MA1209_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m231_MA1212_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m614_MA0008_3_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m632_MA1210_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m633_MA1213_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m729_UN0396_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m748_UN0415_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m71_MA0950_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m72_MA0951_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m73_MA0952_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m74_MA0953_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m693_UN0051_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m126_MA1024_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m393_MA1406_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m325_MA1328_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m734_UN0401_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m103_MA0990_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m496_MA1757_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m358_MA1369_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m364_MA1375_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m326_MA1330_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m749_UN0416_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m324_MA1326_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m457_MA1329_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m434_MA1327_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m542_MA1807_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m746_UN0413_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_40/cluster_13_node_40_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_5/cluster_17_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_17 -name cluster_17 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_5/cluster_17_node_5_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_40/cluster_13_node_40_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_40/cluster_13_node_40_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_39/cluster_13_node_39_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_6/cluster_17_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194508_KfnT2Q


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_5/cluster_17_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194508_AgVDsp


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_4/cluster_17_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194508_cNeNfZ


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_40/cluster_13_nb_motifs_37.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194508_QjIpQ0


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_5/cluster_17_node_5_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_6/cluster_17_node_6_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_4/cluster_17_node_4_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_40/cluster_13_node_40_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m620_MA1055_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m718_UN0359_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_7/cluster_17_node_7_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m155_MA1058_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m154_MA1057_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m156_MA1060_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_9/cluster_17_node_9_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m638_MA0577_3_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m639_MA1322_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m320_MA1321_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m535_MA1799_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_8/cluster_17_node_8_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_7/cluster_17_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_17 -name cluster_17 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_7/cluster_17_node_7_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_9/cluster_17_node_9_cat.tf -v 0 -in_format tf -out_format tf -id cluster_17 -name cluster_17 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_9/cluster_17_node_9_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_8/cluster_17_node_8_cat.tf -v 0 -in_format tf -out_format tf -id cluster_17 -name cluster_17 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_8/cluster_17_node_8_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m581_MA2021_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m245_MA1234_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m268_MA1263_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m112_MA1010_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m467_MA1694_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m471_MA1698_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m465_MA1692_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m416_MA1670_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m441_MA1227_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m234_MA1218_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m415_MA1669_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m238_MA1223_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m243_MA1230_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m250_MA1241_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m264_MA1259_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m442_MA1238_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m439_MA1265_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m571_MA2011_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m235_MA1220_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m404_MA1424_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m422_MA1679_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m260_MA1253_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m634_MA1219_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m252_MA1243_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m365_MA1376_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m767_UN0688_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m242_MA1229_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m440_MA1233_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m491_MA1752_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_46/cluster_15_node_46_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m258_MA1251_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m263_MA1258_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m581_MA2021_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m245_MA1234_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m268_MA1263_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m112_MA1010_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m467_MA1694_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m471_MA1698_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m465_MA1692_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m416_MA1670_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m441_MA1227_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m234_MA1218_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m415_MA1669_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m238_MA1223_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m243_MA1230_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m250_MA1241_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m264_MA1259_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m442_MA1238_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m439_MA1265_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m571_MA2011_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m235_MA1220_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m404_MA1424_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m422_MA1679_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m260_MA1253_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m634_MA1219_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m252_MA1243_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m365_MA1376_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m767_UN0688_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m242_MA1229_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m440_MA1233_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m491_MA1752_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_47/cluster_15_node_47_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_47/cluster_15_node_47_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_47/cluster_15_node_47_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_46/cluster_15_node_46_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_46/cluster_15_node_46_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_8/cluster_17_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194511_Iea4QR


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_7/cluster_17_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194511_TrE9Xq


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_9/cluster_17_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194511_ApAizm


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_47/cluster_15_nb_motifs_31.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194511_9c1DcH


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_46/cluster_15_nb_motifs_29.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194511_jPIFbv


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_8/cluster_17_node_8_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_7/cluster_17_node_7_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_9/cluster_17_node_9_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_47/cluster_15_node_47_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_46/cluster_15_node_46_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m319_MA1320_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m387_MA0586_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m153_MA1056_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m391_MA1059_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_10/cluster_17_node_10_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m75_MA0955_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m155_MA1058_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m154_MA1057_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m156_MA1060_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_11/cluster_17_node_11_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_10/cluster_17_node_10_cat.tf -v 0 -in_format tf -out_format tf -id cluster_17 -name cluster_17 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_10/cluster_17_node_10_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_11/cluster_17_node_11_cat.tf -v 0 -in_format tf -out_format tf -id cluster_17 -name cluster_17 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_11/cluster_17_node_11_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_11/cluster_17_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194514_Os9EqM


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_10/cluster_17_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194514_ptJOQy


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m638_MA0577_3_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m639_MA1322_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m320_MA1321_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m535_MA1799_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m319_MA1320_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m387_MA0586_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m153_MA1056_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m391_MA1059_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_12/cluster_17_node_12_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_11/cluster_17_node_11_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_10/cluster_17_node_10_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_12/cluster_17_node_12_cat.tf -v 0 -in_format tf -out_format tf -id cluster_17 -name cluster_17 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_12/cluster_17_node_12_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_12/cluster_17_nb_motifs_8.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194515_tliHi9


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_12/cluster_17_node_12_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m620_MA1055_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m718_UN0359_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m638_MA0577_3_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m639_MA1322_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m320_MA1321_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m535_MA1799_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m319_MA1320_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m387_MA0586_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m153_MA1056_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m391_MA1059_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_13/cluster_17_node_13_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m557_MA1822_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m570_MA1835_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m620_MA1055_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m718_UN0359_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m638_MA0577_3_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m639_MA1322_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m320_MA1321_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m535_MA1799_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m319_MA1320_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m387_MA0586_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m153_MA1056_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m391_MA1059_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_14/cluster_17_node_14_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_13/cluster_17_node_13_cat.tf -v 0 -in_format tf -out_format tf -id cluster_17 -name cluster_17 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_13/cluster_17_node_13_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_14/cluster_17_node_14_cat.tf -v 0 -in_format tf -out_format tf -id cluster_17 -name cluster_17 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_14/cluster_17_node_14_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_13/cluster_17_nb_motifs_10.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194517_n7JINO


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_14/cluster_17_nb_motifs_12.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194517_qDu2bG


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_13/cluster_17_node_13_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_14/cluster_17_node_14_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m75_MA0955_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m155_MA1058_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m154_MA1057_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m156_MA1060_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m557_MA1822_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m570_MA1835_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m620_MA1055_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m718_UN0359_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m638_MA0577_3_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m639_MA1322_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m320_MA1321_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m535_MA1799_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m319_MA1320_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m387_MA0586_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m153_MA1056_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m391_MA1059_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_15/cluster_17_node_15_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m660_UN0005_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m704_UN0072_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m54_MA0932_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m55_MA0933_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m56_MA0934_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m548_MA1813_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m711_UN0275_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m747_UN0414_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m219_MA1198_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m385_MA0954_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m435_MA0110_3_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m612_MA2052_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m559_MA1824_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m230_MA1211_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m233_MA1215_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m229_MA1209_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m231_MA1212_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m614_MA0008_3_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m632_MA1210_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m633_MA1213_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m729_UN0396_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m748_UN0415_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m71_MA0950_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m72_MA0951_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m73_MA0952_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m74_MA0953_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m693_UN0051_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m126_MA1024_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m393_MA1406_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m325_MA1328_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m734_UN0401_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m103_MA0990_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m496_MA1757_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m358_MA1369_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m364_MA1375_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m326_MA1330_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m749_UN0416_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m324_MA1326_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m457_MA1329_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m434_MA1327_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m542_MA1807_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m746_UN0413_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_41/cluster_13_node_41_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_15/cluster_17_node_15_cat.tf -v 0 -in_format tf -out_format tf -id cluster_17 -name cluster_17 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_15/cluster_17_node_15_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m147_MA1048_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m93_MA0978_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m63_MA0942_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m64_MA0943_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m226_MA1206_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m65_MA0944_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m111_MA1009_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m99_MA0986_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m109_MA1007_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m125_MA1023_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m451_MA0980_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m443_MA0995_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m572_MA2012_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m487_MA1748_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m132_MA1032_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m88_MA0971_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m110_MA1008_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m668_UN0017_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m258_MA1251_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m263_MA1258_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m581_MA2021_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m245_MA1234_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m268_MA1263_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m112_MA1010_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m467_MA1694_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m471_MA1698_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m465_MA1692_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m416_MA1670_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m441_MA1227_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m234_MA1218_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m415_MA1669_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m238_MA1223_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m243_MA1230_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m250_MA1241_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m264_MA1259_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m442_MA1238_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m439_MA1265_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m571_MA2011_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m235_MA1220_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m404_MA1424_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m422_MA1679_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m260_MA1253_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m634_MA1219_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m252_MA1243_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m365_MA1376_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m767_UN0688_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m242_MA1229_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m440_MA1233_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m491_MA1752_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_48/cluster_15_node_48_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_41/cluster_13_node_41_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_41/cluster_13_node_41_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_48/cluster_15_node_48_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_48/cluster_15_node_48_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_15/cluster_17_nb_motifs_16.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194519_mFeUHw


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_41/cluster_13_nb_motifs_42.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194519_RgQsxB


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_48/cluster_15_nb_motifs_49.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194519_kYSv1Q


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_15/cluster_17_node_15_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_13/merged_consensuses/node_41/cluster_13_node_41_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_15/merged_consensuses/node_48/cluster_15_node_48_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m40_MA0578_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m75_MA0955_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m155_MA1058_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m154_MA1057_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m156_MA1060_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m557_MA1822_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m570_MA1835_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m620_MA1055_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m718_UN0359_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m638_MA0577_3_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m639_MA1322_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m320_MA1321_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m535_MA1799_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m319_MA1320_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m387_MA0586_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m153_MA1056_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m391_MA1059_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_16/cluster_17_node_16_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_16/cluster_17_node_16_cat.tf -v 0 -in_format tf -out_format tf -id cluster_17 -name cluster_17 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_16/cluster_17_node_16_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_16/cluster_17_nb_motifs_17.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194522_yecRgl


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_17/merged_consensuses/node_16/cluster_17_node_16_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m534_MA1797_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m536_MA1800_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_18/merged_consensuses/node_1/cluster_18_node_1_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m730_UN0397_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m534_MA1797_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m536_MA1800_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_18/merged_consensuses/node_2/cluster_18_node_2_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m44_MA0582_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m730_UN0397_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m534_MA1797_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m536_MA1800_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_18/merged_consensuses/node_3/cluster_18_node_3_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_18/merged_consensuses/node_1/cluster_18_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_18 -name cluster_18 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_18/merged_consensuses/node_1/cluster_18_node_1_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_18/merged_consensuses/node_2/cluster_18_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_18 -name cluster_18 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_18/merged_consensuses/node_2/cluster_18_node_2_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_18/merged_consensuses/node_3/cluster_18_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_18 -name cluster_18 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_18/merged_consensuses/node_3/cluster_18_node_3_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_18/merged_consensuses/node_1/cluster_18_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194529_xAhaOU


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_18/merged_consensuses/node_2/cluster_18_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194529_BHIaUJ


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_18/merged_consensuses/node_3/cluster_18_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194529_5qUJfZ


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_18/merged_consensuses/node_1/cluster_18_node_1_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_18/merged_consensuses/node_2/cluster_18_node_2_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_18/merged_consensuses/node_3/cluster_18_node_3_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m221_MA1201_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m44_MA0582_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m730_UN0397_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m534_MA1797_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m536_MA1800_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_18/merged_consensuses/node_4/cluster_18_node_4_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m740_UN0407_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m221_MA1201_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m44_MA0582_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m730_UN0397_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m534_MA1797_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m536_MA1800_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_18/merged_consensuses/node_5/cluster_18_node_5_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_18/merged_consensuses/node_4/cluster_18_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_18 -name cluster_18 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_18/merged_consensuses/node_4/cluster_18_node_4_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_18/merged_consensuses/node_5/cluster_18_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_18 -name cluster_18 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_18/merged_consensuses/node_5/cluster_18_node_5_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_18/merged_consensuses/node_4/cluster_18_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194532_8CSDcw


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_18/merged_consensuses/node_5/cluster_18_nb_motifs_6.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194532_rrDL3h


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_18/merged_consensuses/node_4/cluster_18_node_4_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_18/merged_consensuses/node_5/cluster_18_node_5_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m139_MA1039_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m695_UN0057_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_1/cluster_19_node_1_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m136_MA1036_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m140_MA1040_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_2/cluster_19_node_2_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m512_MA1774_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m519_MA1781_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_3/cluster_19_node_3_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_2/cluster_19_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_2/cluster_19_node_2_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_3/cluster_19_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_3/cluster_19_node_3_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_1/cluster_19_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_1/cluster_19_node_1_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_2/cluster_19_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194536_cSWOXr


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_1/cluster_19_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194536_OglDQH


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_3/cluster_19_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194536_SZIzMz


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_2/cluster_19_node_2_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_1/cluster_19_node_1_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_3/cluster_19_node_3_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m427_MA1732_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m489_MA1750_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m488_MA1749_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m427_MA1732_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m489_MA1750_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_node_2_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m399_MA1414_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m488_MA1749_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m427_MA1732_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m489_MA1750_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_node_3_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_node_3_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_node_2_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194538_eCk01G


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194538_KOvoTq


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194538_FpdW9u


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m507_MA1769_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m515_MA1777_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_4/cluster_19_node_4_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m501_MA1762_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m507_MA1769_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m515_MA1777_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_5/cluster_19_node_5_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m139_MA1039_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m695_UN0057_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m136_MA1036_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m140_MA1040_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_6/cluster_19_node_6_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_node_2_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_node_3_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_4/cluster_19_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_4/cluster_19_node_4_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_5/cluster_19_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_5/cluster_19_node_5_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_6/cluster_19_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_6/cluster_19_node_6_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_4/cluster_19_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194539_GUNkJv


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_5/cluster_19_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194539_Rltl83


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_6/cluster_19_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194539_cYKb69


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_4/cluster_19_node_4_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_5/cluster_19_node_5_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_6/cluster_19_node_6_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m115_MA1013_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m116_MA1014_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_1/cluster_20_node_1_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m117_MA1015_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m115_MA1013_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m116_MA1014_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_2/cluster_20_node_2_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m10_MA0121_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m68_MA0947_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_3/cluster_20_node_3_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m294_MA1292_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m586_MA2026_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_7/cluster_19_node_7_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m510_MA1772_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m513_MA1775_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_8/cluster_19_node_8_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m516_MA1778_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m588_MA2028_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_9/cluster_19_node_9_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_1/cluster_20_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_20 -name cluster_20 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_1/cluster_20_node_1_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_2/cluster_20_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_20 -name cluster_20 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_2/cluster_20_node_2_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_3/cluster_20_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_20 -name cluster_20 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_3/cluster_20_node_3_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_7/cluster_19_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_7/cluster_19_node_7_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_9/cluster_19_node_9_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_9/cluster_19_node_9_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_8/cluster_19_node_8_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_8/cluster_19_node_8_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_3/cluster_20_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194542_1ggmBr


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_9/cluster_19_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194542_bYorg5


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_8/cluster_19_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194542_dx4VtJ


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_1/cluster_20_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194542_eKD8Sp


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_2/cluster_20_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194542_Gy3lYU


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_7/cluster_19_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194542_CJTL2F


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_9/cluster_19_node_9_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_8/cluster_19_node_8_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_2/cluster_20_node_2_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_3/cluster_20_node_3_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_7/cluster_19_node_7_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_1/cluster_20_node_1_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m119_MA1017_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m494_MA1755_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_5/cluster_20_node_5_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m395_MA1409_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m66_MA0945_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_4/cluster_20_node_4_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m476_MA1737_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m70_MA0949_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_6/cluster_20_node_6_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m429_MA2008_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m518_MA1780_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_10/cluster_19_node_10_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m709_UN0078_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m139_MA1039_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m695_UN0057_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m136_MA1036_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m140_MA1040_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_11/cluster_19_node_11_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m601_MA2041_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m602_MA2042_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_12/cluster_19_node_12_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_4/cluster_20_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_20 -name cluster_20 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_4/cluster_20_node_4_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_5/cluster_20_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_20 -name cluster_20 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_5/cluster_20_node_5_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_6/cluster_20_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_20 -name cluster_20 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_6/cluster_20_node_6_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_10/cluster_19_node_10_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_10/cluster_19_node_10_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_12/cluster_19_node_12_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_12/cluster_19_node_12_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_11/cluster_19_node_11_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_11/cluster_19_node_11_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_4/cluster_20_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194545_7B4o4j


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_5/cluster_20_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194545_Wmc0fK


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_6/cluster_20_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194545_PT51WJ


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_12/cluster_19_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194545_9KvN6R


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_11/cluster_19_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194545_dk4vgp


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_10/cluster_19_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194545_5rR4Ci


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_4/cluster_20_node_4_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_5/cluster_20_node_5_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_6/cluster_20_node_6_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_12/cluster_19_node_12_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_10/cluster_19_node_10_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_11/cluster_19_node_11_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m426_MA2006_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m616_MA0938_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_1/cluster_21_node_1_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m605_MA2045_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m426_MA2006_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m616_MA0938_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_2/cluster_21_node_2_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m480_MA1741_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m529_MA1792_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_3/cluster_21_node_3_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_1/cluster_21_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_21 -name cluster_21 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_1/cluster_21_node_1_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_3/cluster_21_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_21 -name cluster_21 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_3/cluster_21_node_3_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_2/cluster_21_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_21 -name cluster_21 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_2/cluster_21_node_2_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_1/cluster_21_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194547_EuzEO9


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_3/cluster_21_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194547_ILJqHU


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_2/cluster_21_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194547_U7WhDe


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m118_MA1016_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m119_MA1017_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m494_MA1755_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_7/cluster_20_node_7_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m395_MA1409_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m66_MA0945_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m476_MA1737_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m70_MA0949_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_8/cluster_20_node_8_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m295_MA1293_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m294_MA1292_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m586_MA2026_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_13/cluster_19_node_13_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m503_MA1765_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m501_MA1762_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m507_MA1769_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m515_MA1777_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_14/cluster_19_node_14_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_1/cluster_21_node_1_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_3/cluster_21_node_3_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_2/cluster_21_node_2_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_8/cluster_20_node_8_cat.tf -v 0 -in_format tf -out_format tf -id cluster_20 -name cluster_20 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_8/cluster_20_node_8_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_13/cluster_19_node_13_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_13/cluster_19_node_13_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_7/cluster_20_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_20 -name cluster_20 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_7/cluster_20_node_7_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_14/cluster_19_node_14_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_14/cluster_19_node_14_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_7/cluster_20_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194548_rj3x7v


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_13/cluster_19_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194548_tctClM


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_14/cluster_19_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194548_r5gqV8


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_8/cluster_20_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194548_AfKTtm


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m508_MA1770_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m503_MA1765_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m501_MA1762_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m507_MA1769_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m515_MA1777_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_15/cluster_19_node_15_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_7/cluster_20_node_7_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_13/cluster_19_node_13_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_14/cluster_19_node_14_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_8/cluster_20_node_8_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_15/cluster_19_node_15_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_15/cluster_19_node_15_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_15/cluster_19_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194549_vJ4Dqk


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m526_MA1789_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m527_MA1790_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_4/cluster_21_node_4_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m430_MA2009_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m605_MA2045_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m426_MA2006_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m616_MA0938_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_5/cluster_21_node_5_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m593_MA2033_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m430_MA2009_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m605_MA2045_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m426_MA2006_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m616_MA0938_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_6/cluster_21_node_6_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_15/cluster_19_node_15_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_4/cluster_21_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_21 -name cluster_21 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_4/cluster_21_node_4_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_5/cluster_21_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_21 -name cluster_21 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_5/cluster_21_node_5_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_6/cluster_21_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_21 -name cluster_21 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_6/cluster_21_node_6_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_4/cluster_21_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194550_Os2kVb


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_5/cluster_21_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194550_2Knpc4


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_6/cluster_21_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194550_gCqZDu


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m323_MA1325_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m378_MA1396_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_9/cluster_20_node_9_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m502_MA1764_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m564_MA1829_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_16/cluster_19_node_16_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m428_MA2007_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m585_MA2025_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_17/cluster_19_node_17_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_4/cluster_21_node_4_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_5/cluster_21_node_5_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_6/cluster_21_node_6_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_9/cluster_20_node_9_cat.tf -v 0 -in_format tf -out_format tf -id cluster_20 -name cluster_20 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_9/cluster_20_node_9_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_16/cluster_19_node_16_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_16/cluster_19_node_16_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_17/cluster_19_node_17_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_17/cluster_19_node_17_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_9/cluster_20_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194551_wJJxKq


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_16/cluster_19_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194551_6r4pE7


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_17/cluster_19_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194551_h5QGvm


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_9/cluster_20_node_9_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_16/cluster_19_node_16_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_17/cluster_19_node_17_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m473_MA1734_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m480_MA1741_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m529_MA1792_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_7/cluster_21_node_7_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m394_MA1408_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m716_UN0355_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_18/cluster_19_node_18_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_7/cluster_21_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_21 -name cluster_21 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_7/cluster_21_node_7_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_18/cluster_19_node_18_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_18/cluster_19_node_18_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_7/cluster_21_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194553_3firdw


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_18/cluster_19_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194553_dLZzL8


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m117_MA1015_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m115_MA1013_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m116_MA1014_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m118_MA1016_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m119_MA1017_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m494_MA1755_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_10/cluster_20_node_10_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m520_MA1783_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m528_MA1791_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_9/cluster_21_node_9_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m526_MA1789_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m527_MA1790_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m473_MA1734_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m480_MA1741_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m529_MA1792_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_8/cluster_21_node_8_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m37_MA0574_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m39_MA0576_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_19/cluster_19_node_19_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m510_MA1772_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m513_MA1775_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m508_MA1770_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m503_MA1765_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m501_MA1762_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m507_MA1769_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m515_MA1777_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_20/cluster_19_node_20_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_7/cluster_21_node_7_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_18/cluster_19_node_18_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_9/cluster_21_node_9_cat.tf -v 0 -in_format tf -out_format tf -id cluster_21 -name cluster_21 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_9/cluster_21_node_9_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_10/cluster_20_node_10_cat.tf -v 0 -in_format tf -out_format tf -id cluster_20 -name cluster_20 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_10/cluster_20_node_10_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_20/cluster_19_node_20_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_20/cluster_19_node_20_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_8/cluster_21_node_8_cat.tf -v 0 -in_format tf -out_format tf -id cluster_21 -name cluster_21 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_8/cluster_21_node_8_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_19/cluster_19_node_19_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_19/cluster_19_node_19_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_9/cluster_21_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194554_kPu7PS


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_8/cluster_21_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194554_9uUSi2


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_20/cluster_19_nb_motifs_7.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194554_QFVFQG


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_10/cluster_20_nb_motifs_6.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194554_y9EyUV


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_19/cluster_19_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194554_jHomoE


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_9/cluster_21_node_9_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_8/cluster_21_node_8_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_10/cluster_20_node_10_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_20/cluster_19_node_20_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_19/cluster_19_node_19_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m412_MA1660_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m593_MA2033_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m430_MA2009_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m605_MA2045_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m426_MA2006_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m616_MA0938_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_10/cluster_21_node_10_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_10/cluster_21_node_10_cat.tf -v 0 -in_format tf -out_format tf -id cluster_21 -name cluster_21 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_10/cluster_21_node_10_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_10/cluster_21_nb_motifs_6.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194556_TXw18a


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m521_MA1784_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m520_MA1783_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m528_MA1791_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_11/cluster_21_node_11_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m142_MA1042_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m709_UN0078_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m139_MA1039_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m695_UN0057_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m136_MA1036_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m140_MA1040_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_21/cluster_19_node_21_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_10/cluster_21_node_10_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_11/cluster_21_node_11_cat.tf -v 0 -in_format tf -out_format tf -id cluster_21 -name cluster_21 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_11/cluster_21_node_11_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_21/cluster_19_node_21_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_21/cluster_19_node_21_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_11/cluster_21_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194557_a5M2eV


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_21/cluster_19_nb_motifs_6.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194557_FoCssW


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m10_MA0121_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m68_MA0947_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m395_MA1409_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m66_MA0945_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m476_MA1737_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m70_MA0949_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_11/cluster_20_node_11_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m595_MA2035_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m412_MA1660_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m593_MA2033_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m430_MA2009_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m605_MA2045_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m426_MA2006_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m616_MA0938_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_12/cluster_21_node_12_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m506_MA1768_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m590_MA2030_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_22/cluster_19_node_22_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_11/cluster_21_node_11_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_21/cluster_19_node_21_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_11/cluster_20_node_11_cat.tf -v 0 -in_format tf -out_format tf -id cluster_20 -name cluster_20 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_11/cluster_20_node_11_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_12/cluster_21_node_12_cat.tf -v 0 -in_format tf -out_format tf -id cluster_21 -name cluster_21 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_12/cluster_21_node_12_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_22/cluster_19_node_22_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_22/cluster_19_node_22_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_12/cluster_21_nb_motifs_7.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194558_N8w20i


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_11/cluster_20_nb_motifs_6.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194558_AKwXMd


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_22/cluster_19_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194558_sFNWOi


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_12/cluster_21_node_12_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_11/cluster_20_node_11_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_22/cluster_19_node_22_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m525_MA1788_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m526_MA1789_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m527_MA1790_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m473_MA1734_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m480_MA1741_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m529_MA1792_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_13/cluster_21_node_13_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m521_MA1784_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m520_MA1783_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m528_MA1791_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m595_MA2035_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m412_MA1660_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m593_MA2033_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m430_MA2009_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m605_MA2045_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m426_MA2006_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m616_MA0938_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_14/cluster_21_node_14_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_13/cluster_21_node_13_cat.tf -v 0 -in_format tf -out_format tf -id cluster_21 -name cluster_21 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_13/cluster_21_node_13_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_14/cluster_21_node_14_cat.tf -v 0 -in_format tf -out_format tf -id cluster_21 -name cluster_21 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_14/cluster_21_node_14_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_13/cluster_21_nb_motifs_6.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194600_t59AXC


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_14/cluster_21_nb_motifs_10.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194600_temRiI


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m504_MA1766_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m584_MA2024_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_23/cluster_19_node_23_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m138_MA1038_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m394_MA1408_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m716_UN0355_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_24/cluster_19_node_24_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_13/cluster_21_node_13_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_14/cluster_21_node_14_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_24/cluster_19_node_24_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_24/cluster_19_node_24_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_23/cluster_19_node_23_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_23/cluster_19_node_23_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_23/cluster_19_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194601_mEsak0


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_24/cluster_19_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194601_qWdj21


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m67_MA0946_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m10_MA0121_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m68_MA0947_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m395_MA1409_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m66_MA0945_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m476_MA1737_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m70_MA0949_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_12/cluster_20_node_12_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m525_MA1788_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m526_MA1789_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m527_MA1790_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m473_MA1734_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m480_MA1741_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m529_MA1792_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m521_MA1784_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m520_MA1783_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m528_MA1791_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m595_MA2035_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m412_MA1660_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m593_MA2033_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m430_MA2009_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m605_MA2045_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m426_MA2006_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m616_MA0938_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_15/cluster_21_node_15_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_24/cluster_19_node_24_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_12/cluster_20_node_12_cat.tf -v 0 -in_format tf -out_format tf -id cluster_20 -name cluster_20 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_12/cluster_20_node_12_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_23/cluster_19_node_23_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_15/cluster_21_node_15_cat.tf -v 0 -in_format tf -out_format tf -id cluster_21 -name cluster_21 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_15/cluster_21_node_15_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_12/cluster_20_nb_motifs_7.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194602_60Urcy


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_15/cluster_21_nb_motifs_16.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194602_ZZm829


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_12/cluster_20_node_12_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_21/merged_consensuses/node_15/cluster_21_node_15_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m516_MA1778_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m588_MA2028_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m510_MA1772_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m513_MA1775_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m508_MA1770_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m503_MA1765_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m501_MA1762_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m507_MA1769_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m515_MA1777_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_25/cluster_19_node_25_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_25/cluster_19_node_25_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_25/cluster_19_node_25_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_25/cluster_19_nb_motifs_9.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194604_9WpK6h


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_25/cluster_19_node_25_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m321_MA1323_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m322_MA1324_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_13/cluster_20_node_13_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_13/cluster_20_node_13_cat.tf -v 0 -in_format tf -out_format tf -id cluster_20 -name cluster_20 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_13/cluster_20_node_13_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_13/cluster_20_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194606_1vNmln


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_13/cluster_20_node_13_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m296_MA1294_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m295_MA1293_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m294_MA1292_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m586_MA2026_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_26/cluster_19_node_26_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_26/cluster_19_node_26_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_26/cluster_19_node_26_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_26/cluster_19_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194608_2Be452


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m368_MA1379_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m369_MA1380_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_22/merged_consensuses/node_1/cluster_22_node_1_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m186_MA1162_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m368_MA1379_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m369_MA1380_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_22/merged_consensuses/node_2/cluster_22_node_2_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m707_UN0076_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m744_UN0411_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_22/merged_consensuses/node_3/cluster_22_node_3_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m120_MA1018_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m117_MA1015_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m115_MA1013_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m116_MA1014_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m118_MA1016_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m119_MA1017_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m494_MA1755_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_14/cluster_20_node_14_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_26/cluster_19_node_26_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_22/merged_consensuses/node_1/cluster_22_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_22 -name cluster_22 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_22/merged_consensuses/node_1/cluster_22_node_1_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_22/merged_consensuses/node_2/cluster_22_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_22 -name cluster_22 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_22/merged_consensuses/node_2/cluster_22_node_2_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_22/merged_consensuses/node_3/cluster_22_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_22 -name cluster_22 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_22/merged_consensuses/node_3/cluster_22_node_3_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_14/cluster_20_node_14_cat.tf -v 0 -in_format tf -out_format tf -id cluster_20 -name cluster_20 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_14/cluster_20_node_14_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_22/merged_consensuses/node_1/cluster_22_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194609_l1dIW0


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_22/merged_consensuses/node_2/cluster_22_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194609_YcUsP4


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_22/merged_consensuses/node_3/cluster_22_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194609_qg5ntB


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_14/cluster_20_nb_motifs_7.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194609_3GTcpb


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_22/merged_consensuses/node_1/cluster_22_node_1_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_22/merged_consensuses/node_3/cluster_22_node_3_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_22/merged_consensuses/node_2/cluster_22_node_2_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_14/cluster_20_node_14_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m502_MA1764_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m564_MA1829_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m296_MA1294_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m295_MA1293_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m294_MA1292_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m586_MA2026_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_27/cluster_19_node_27_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_27/cluster_19_node_27_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_27/cluster_19_node_27_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m185_MA1161_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m186_MA1162_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m368_MA1379_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m369_MA1380_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_22/merged_consensuses/node_4/cluster_22_node_4_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m424_MA1682_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m707_UN0076_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m744_UN0411_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_22/merged_consensuses/node_6/cluster_22_node_6_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m722_UN0388_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m185_MA1161_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m186_MA1162_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m368_MA1379_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m369_MA1380_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_22/merged_consensuses/node_5/cluster_22_node_5_cat.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_27/cluster_19_nb_motifs_6.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194611_0quEYK


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_22/merged_consensuses/node_4/cluster_22_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_22 -name cluster_22 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_22/merged_consensuses/node_4/cluster_22_node_4_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_22/merged_consensuses/node_6/cluster_22_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_22 -name cluster_22 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_22/merged_consensuses/node_6/cluster_22_node_6_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_22/merged_consensuses/node_5/cluster_22_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_22 -name cluster_22 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_22/merged_consensuses/node_5/cluster_22_node_5_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_27/cluster_19_node_27_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_22/merged_consensuses/node_4/cluster_22_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194612_kpg9iQ


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_22/merged_consensuses/node_5/cluster_22_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194612_h9brmC


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_22/merged_consensuses/node_6/cluster_22_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194612_OeLi2C


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m69_MA0948_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m67_MA0946_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m10_MA0121_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m68_MA0947_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m395_MA1409_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m66_MA0945_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m476_MA1737_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m70_MA0949_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_15/cluster_20_node_15_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_22/merged_consensuses/node_4/cluster_22_node_4_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_22/merged_consensuses/node_5/cluster_22_node_5_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_22/merged_consensuses/node_6/cluster_22_node_6_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_15/cluster_20_node_15_cat.tf -v 0 -in_format tf -out_format tf -id cluster_20 -name cluster_20 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_15/cluster_20_node_15_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_15/cluster_20_nb_motifs_8.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194613_knJsN5


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m429_MA2008_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m518_MA1780_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m138_MA1038_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m394_MA1408_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m716_UN0355_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_28/cluster_19_node_28_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_15/cluster_20_node_15_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_28/cluster_19_node_28_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_28/cluster_19_node_28_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_28/cluster_19_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194614_tf2b2o


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m713_UN0351_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m722_UN0388_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m185_MA1161_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m186_MA1162_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m368_MA1379_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m369_MA1380_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_22/merged_consensuses/node_7/cluster_22_node_7_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m424_MA1682_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m707_UN0076_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m744_UN0411_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m713_UN0351_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m722_UN0388_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m185_MA1161_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m186_MA1162_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m368_MA1379_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m369_MA1380_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_22/merged_consensuses/node_8/cluster_22_node_8_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_22/merged_consensuses/node_7/cluster_22_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_22 -name cluster_22 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_22/merged_consensuses/node_7/cluster_22_node_7_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_28/cluster_19_node_28_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_22/merged_consensuses/node_8/cluster_22_node_8_cat.tf -v 0 -in_format tf -out_format tf -id cluster_22 -name cluster_22 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_22/merged_consensuses/node_8/cluster_22_node_8_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_22/merged_consensuses/node_7/cluster_22_nb_motifs_6.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194615_3U3E9p


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_22/merged_consensuses/node_8/cluster_22_nb_motifs_9.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194615_qLs4A0


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m120_MA1018_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m117_MA1015_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m115_MA1013_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m116_MA1014_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m118_MA1016_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m119_MA1017_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m494_MA1755_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m69_MA0948_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m67_MA0946_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m10_MA0121_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m68_MA0947_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m395_MA1409_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m66_MA0945_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m476_MA1737_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m70_MA0949_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_16/cluster_20_node_16_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_22/merged_consensuses/node_7/cluster_22_node_7_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m505_MA1767_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m517_MA1779_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_29/cluster_19_node_29_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_22/merged_consensuses/node_8/cluster_22_node_8_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_16/cluster_20_node_16_cat.tf -v 0 -in_format tf -out_format tf -id cluster_20 -name cluster_20 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_16/cluster_20_node_16_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_29/cluster_19_node_29_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_29/cluster_19_node_29_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_16/cluster_20_nb_motifs_15.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194616_L5lJHF


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_29/cluster_19_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194616_FGZnP0


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_16/cluster_20_node_16_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_29/cluster_19_node_29_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m321_MA1323_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m322_MA1324_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m120_MA1018_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m117_MA1015_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m115_MA1013_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m116_MA1014_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m118_MA1016_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m119_MA1017_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m494_MA1755_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m69_MA0948_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m67_MA0946_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m10_MA0121_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m68_MA0947_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m395_MA1409_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m66_MA0945_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m476_MA1737_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m70_MA0949_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_17/cluster_20_node_17_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m512_MA1774_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m519_MA1781_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m506_MA1768_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m590_MA2030_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_30/cluster_19_node_30_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_17/cluster_20_node_17_cat.tf -v 0 -in_format tf -out_format tf -id cluster_20 -name cluster_20 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_17/cluster_20_node_17_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_30/cluster_19_node_30_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_30/cluster_19_node_30_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_17/cluster_20_nb_motifs_17.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194619_FfY6hY


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_30/cluster_19_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194619_KT0H7Z


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m34_MA0005_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m48_MA0585_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_1/cluster_23_node_1_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m21_MA0556_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m223_MA1203_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_2/cluster_23_node_2_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m46_MA0584_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m47_MA0001_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_3/cluster_23_node_3_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_17/cluster_20_node_17_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_1/cluster_23_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_23 -name cluster_23 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_1/cluster_23_node_1_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_30/cluster_19_node_30_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_3/cluster_23_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_23 -name cluster_23 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_3/cluster_23_node_3_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_2/cluster_23_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_23 -name cluster_23 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_2/cluster_23_node_2_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_1/cluster_23_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194620_ZxHxUn


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_2/cluster_23_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194620_CApqoA


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_3/cluster_23_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194620_nfryQd


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_1/cluster_23_node_1_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_2/cluster_23_node_2_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_3/cluster_23_node_3_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m504_MA1766_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m584_MA2024_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m516_MA1778_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m588_MA2028_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m510_MA1772_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m513_MA1775_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m508_MA1770_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m503_MA1765_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m501_MA1762_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m507_MA1769_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m515_MA1777_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_31/cluster_19_node_31_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_31/cluster_19_node_31_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_31/cluster_19_node_31_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_31/cluster_19_nb_motifs_11.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194622_csaCH9


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m220_MA1199_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m21_MA0556_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m223_MA1203_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_4/cluster_23_node_4_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m224_MA1204_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m225_MA1205_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_5/cluster_23_node_5_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m114_MA1012_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m24_MA0559_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_6/cluster_23_node_6_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_4/cluster_23_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_23 -name cluster_23 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_4/cluster_23_node_4_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_5/cluster_23_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_23 -name cluster_23 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_5/cluster_23_node_5_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_6/cluster_23_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_23 -name cluster_23 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_6/cluster_23_node_6_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_31/cluster_19_node_31_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_4/cluster_23_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194623_jEMMRI


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_5/cluster_23_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194623_7AMxw9


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_6/cluster_23_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194623_15eutV


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_4/cluster_23_node_4_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_5/cluster_23_node_5_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_6/cluster_23_node_6_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m141_MA1041_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m142_MA1042_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m709_UN0078_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m139_MA1039_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m695_UN0057_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m136_MA1036_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m140_MA1040_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_32/cluster_19_node_32_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_32/cluster_19_node_32_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_32/cluster_19_node_32_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_32/cluster_19_nb_motifs_7.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194624_FGUoPE


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_32/cluster_19_node_32_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m20_MA0555_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m23_MA0558_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_7/cluster_23_node_7_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m19_MA0554_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m114_MA1012_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m24_MA0559_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_8/cluster_23_node_8_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m61_MA0940_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m19_MA0554_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m114_MA1012_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m24_MA0559_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_9/cluster_23_node_9_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m428_MA2007_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m585_MA2025_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m504_MA1766_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m584_MA2024_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m516_MA1778_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m588_MA2028_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m510_MA1772_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m513_MA1775_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m508_MA1770_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m503_MA1765_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m501_MA1762_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m507_MA1769_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m515_MA1777_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_33/cluster_19_node_33_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_7/cluster_23_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_23 -name cluster_23 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_7/cluster_23_node_7_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_9/cluster_23_node_9_cat.tf -v 0 -in_format tf -out_format tf -id cluster_23 -name cluster_23 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_9/cluster_23_node_9_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_8/cluster_23_node_8_cat.tf -v 0 -in_format tf -out_format tf -id cluster_23 -name cluster_23 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_8/cluster_23_node_8_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_33/cluster_19_node_33_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_33/cluster_19_node_33_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_7/cluster_23_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194626_B4F2sX


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_8/cluster_23_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194626_OmhJEX


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_9/cluster_23_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194626_IRgmSE


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_33/cluster_19_nb_motifs_13.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194626_Ag2JAE


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_7/cluster_23_node_7_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_8/cluster_23_node_8_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_9/cluster_23_node_9_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_33/cluster_19_node_33_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m502_MA1764_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m564_MA1829_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m296_MA1294_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m295_MA1293_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m294_MA1292_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m586_MA2026_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m428_MA2007_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m585_MA2025_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m504_MA1766_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m584_MA2024_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m516_MA1778_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m588_MA2028_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m510_MA1772_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m513_MA1775_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m508_MA1770_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m503_MA1765_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m501_MA1762_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m507_MA1769_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m515_MA1777_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_34/cluster_19_node_34_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_34/cluster_19_node_34_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_34/cluster_19_node_34_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_34/cluster_19_nb_motifs_19.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194628_t3k1G5


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m389_MA0548_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m34_MA0005_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m48_MA0585_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_12/cluster_23_node_12_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m224_MA1204_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m225_MA1205_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m20_MA0555_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m23_MA0558_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_11/cluster_23_node_11_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m7_MA0082_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m61_MA0940_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m19_MA0554_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m114_MA1012_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m24_MA0559_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_10/cluster_23_node_10_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_12/cluster_23_node_12_cat.tf -v 0 -in_format tf -out_format tf -id cluster_23 -name cluster_23 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_12/cluster_23_node_12_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_11/cluster_23_node_11_cat.tf -v 0 -in_format tf -out_format tf -id cluster_23 -name cluster_23 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_11/cluster_23_node_11_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_10/cluster_23_node_10_cat.tf -v 0 -in_format tf -out_format tf -id cluster_23 -name cluster_23 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_10/cluster_23_node_10_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_34/cluster_19_node_34_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_12/cluster_23_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194629_rWHeMN


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_11/cluster_23_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194629_pTFwma


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_10/cluster_23_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194629_deqhDX


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_12/cluster_23_node_12_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_11/cluster_23_node_11_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_10/cluster_23_node_10_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m323_MA1325_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m378_MA1396_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m321_MA1323_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m322_MA1324_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m120_MA1018_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m117_MA1015_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m115_MA1013_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m116_MA1014_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m118_MA1016_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m119_MA1017_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m494_MA1755_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m69_MA0948_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m67_MA0946_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m10_MA0121_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m68_MA0947_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m395_MA1409_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m66_MA0945_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m476_MA1737_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m70_MA0949_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_18/cluster_20_node_18_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m429_MA2008_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m518_MA1780_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m138_MA1038_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m394_MA1408_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m716_UN0355_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m141_MA1041_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m142_MA1042_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m709_UN0078_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m139_MA1039_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m695_UN0057_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m136_MA1036_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m140_MA1040_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_35/cluster_19_node_35_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_18/cluster_20_node_18_cat.tf -v 0 -in_format tf -out_format tf -id cluster_20 -name cluster_20 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_18/cluster_20_node_18_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_35/cluster_19_node_35_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_35/cluster_19_node_35_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_18/cluster_20_nb_motifs_19.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194631_weynok


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_35/cluster_19_nb_motifs_12.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194631_RzRxEy


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m46_MA0584_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m47_MA0001_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m389_MA0548_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m34_MA0005_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m48_MA0585_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_13/cluster_23_node_13_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m220_MA1199_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m21_MA0556_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m223_MA1203_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m7_MA0082_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m61_MA0940_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m19_MA0554_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m114_MA1012_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m24_MA0559_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_14/cluster_23_node_14_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m224_MA1204_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m225_MA1205_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m20_MA0555_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m23_MA0558_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m46_MA0584_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m47_MA0001_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m389_MA0548_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m34_MA0005_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m48_MA0585_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_15/cluster_23_node_15_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_20/merged_consensuses/node_18/cluster_20_node_18_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_13/cluster_23_node_13_cat.tf -v 0 -in_format tf -out_format tf -id cluster_23 -name cluster_23 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_13/cluster_23_node_13_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_15/cluster_23_node_15_cat.tf -v 0 -in_format tf -out_format tf -id cluster_23 -name cluster_23 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_15/cluster_23_node_15_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_14/cluster_23_node_14_cat.tf -v 0 -in_format tf -out_format tf -id cluster_23 -name cluster_23 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_14/cluster_23_node_14_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_35/cluster_19_node_35_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_13/cluster_23_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194632_FbLPwI


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_14/cluster_23_nb_motifs_8.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194632_sMvgfL


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_15/cluster_23_nb_motifs_9.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194632_Ohd19P


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_13/cluster_23_node_13_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m477_MA1738_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m601_MA2041_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m602_MA2042_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_36/cluster_19_node_36_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_14/cluster_23_node_14_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_15/cluster_23_node_15_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_36/cluster_19_node_36_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_36/cluster_19_node_36_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_36/cluster_19_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194633_ZdAxIH


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_36/cluster_19_node_36_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m28_MA0563_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m220_MA1199_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m21_MA0556_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m223_MA1203_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m7_MA0082_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m61_MA0940_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m19_MA0554_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m114_MA1012_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m24_MA0559_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_16/cluster_23_node_16_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m224_MA1204_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m225_MA1205_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m20_MA0555_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m23_MA0558_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m46_MA0584_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m47_MA0001_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m389_MA0548_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m34_MA0005_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m48_MA0585_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m28_MA0563_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m220_MA1199_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m21_MA0556_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m223_MA1203_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m7_MA0082_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m61_MA0940_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m19_MA0554_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m114_MA1012_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m24_MA0559_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_17/cluster_23_node_17_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m549_MA1814_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m224_MA1204_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m225_MA1205_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m20_MA0555_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m23_MA0558_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m46_MA0584_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m47_MA0001_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m389_MA0548_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m34_MA0005_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m48_MA0585_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m28_MA0563_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m220_MA1199_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m21_MA0556_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m223_MA1203_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m7_MA0082_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m61_MA0940_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m19_MA0554_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m114_MA1012_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m24_MA0559_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_18/cluster_23_node_18_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_16/cluster_23_node_16_cat.tf -v 0 -in_format tf -out_format tf -id cluster_23 -name cluster_23 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_16/cluster_23_node_16_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_17/cluster_23_node_17_cat.tf -v 0 -in_format tf -out_format tf -id cluster_23 -name cluster_23 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_17/cluster_23_node_17_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_18/cluster_23_node_18_cat.tf -v 0 -in_format tf -out_format tf -id cluster_23 -name cluster_23 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_18/cluster_23_node_18_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_16/cluster_23_nb_motifs_9.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194635_8qgonA


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_18/cluster_23_nb_motifs_19.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194635_kLJNjy


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_17/cluster_23_nb_motifs_18.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194635_98IIhm


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_16/cluster_23_node_16_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m512_MA1774_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m519_MA1781_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m506_MA1768_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m590_MA2030_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m477_MA1738_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m601_MA2041_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m602_MA2042_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_37/cluster_19_node_37_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_18/cluster_23_node_18_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_23/merged_consensuses/node_17/cluster_23_node_17_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_37/cluster_19_node_37_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_37/cluster_19_node_37_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_37/cluster_19_nb_motifs_7.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194636_ZpT6yv


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_37/cluster_19_node_37_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m509_MA1771_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m511_MA1773_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_38/cluster_19_node_38_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_38/cluster_19_node_38_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_38/cluster_19_node_38_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_38/cluster_19_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194638_mNVYcz


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_38/cluster_19_node_38_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m137_MA1037_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m429_MA2008_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m518_MA1780_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m138_MA1038_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m394_MA1408_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m716_UN0355_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m141_MA1041_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m142_MA1042_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m709_UN0078_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m139_MA1039_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m695_UN0057_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m136_MA1036_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m140_MA1040_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_39/cluster_19_node_39_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_39/cluster_19_node_39_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_39/cluster_19_node_39_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_39/cluster_19_nb_motifs_13.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194640_gxvSZY


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m481_MA1742_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m485_MA1746_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_24/merged_consensuses/node_1/cluster_24_node_1_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m337_MA1343_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m539_MA1803_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_24/merged_consensuses/node_2/cluster_24_node_2_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m483_MA1744_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m481_MA1742_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m485_MA1746_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_24/merged_consensuses/node_3/cluster_24_node_3_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m37_MA0574_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m39_MA0576_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m505_MA1767_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m517_MA1779_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_40/cluster_19_node_40_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_24/merged_consensuses/node_1/cluster_24_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_24 -name cluster_24 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_24/merged_consensuses/node_1/cluster_24_node_1_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_24/merged_consensuses/node_2/cluster_24_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_24 -name cluster_24 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_24/merged_consensuses/node_2/cluster_24_node_2_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_24/merged_consensuses/node_3/cluster_24_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_24 -name cluster_24 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_24/merged_consensuses/node_3/cluster_24_node_3_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_39/cluster_19_node_39_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_40/cluster_19_node_40_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_40/cluster_19_node_40_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_24/merged_consensuses/node_3/cluster_24_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194641_BOjdX4


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_40/cluster_19_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194641_OeLzss


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_24/merged_consensuses/node_3/cluster_24_node_3_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_24/merged_consensuses/node_1/cluster_24_node_1_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_24/merged_consensuses/node_2/cluster_24_node_2_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_40/cluster_19_node_40_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m657_UN0001_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m681_UN0038_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_24/merged_consensuses/node_4/cluster_24_node_4_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m483_MA1744_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m481_MA1742_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m485_MA1746_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m657_UN0001_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m681_UN0038_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_24/merged_consensuses/node_5/cluster_24_node_5_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m337_MA1343_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m539_MA1803_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m483_MA1744_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m481_MA1742_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m485_MA1746_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m657_UN0001_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m681_UN0038_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_24/merged_consensuses/node_6/cluster_24_node_6_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_24/merged_consensuses/node_4/cluster_24_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_24 -name cluster_24 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_24/merged_consensuses/node_4/cluster_24_node_4_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_24/merged_consensuses/node_5/cluster_24_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_24 -name cluster_24 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_24/merged_consensuses/node_5/cluster_24_node_5_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_24/merged_consensuses/node_6/cluster_24_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_24 -name cluster_24 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_24/merged_consensuses/node_6/cluster_24_node_6_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m502_MA1764_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m564_MA1829_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m296_MA1294_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m295_MA1293_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m294_MA1292_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m586_MA2026_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m428_MA2007_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m585_MA2025_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m504_MA1766_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m584_MA2024_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m516_MA1778_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m588_MA2028_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m510_MA1772_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m513_MA1775_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m508_MA1770_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m503_MA1765_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m501_MA1762_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m507_MA1769_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m515_MA1777_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m137_MA1037_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m429_MA2008_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m518_MA1780_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m138_MA1038_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m394_MA1408_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m716_UN0355_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m141_MA1041_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m142_MA1042_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m709_UN0078_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m139_MA1039_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m695_UN0057_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m136_MA1036_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m140_MA1040_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_41/cluster_19_node_41_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_41/cluster_19_node_41_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_41/cluster_19_node_41_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_24/merged_consensuses/node_4/cluster_24_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194644_8S25Ju


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_24/merged_consensuses/node_6/cluster_24_nb_motifs_7.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194644_gKiVNi


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_24/merged_consensuses/node_5/cluster_24_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194644_Ia4GPh


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_41/cluster_19_nb_motifs_32.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194644_Lpi57l


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_24/merged_consensuses/node_4/cluster_24_node_4_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_24/merged_consensuses/node_6/cluster_24_node_6_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_24/merged_consensuses/node_5/cluster_24_node_5_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_41/cluster_19_node_41_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m705_UN0073_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m337_MA1343_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m539_MA1803_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m483_MA1744_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m481_MA1742_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m485_MA1746_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m657_UN0001_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m681_UN0038_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_24/merged_consensuses/node_7/cluster_24_node_7_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m537_MA1801_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m705_UN0073_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m337_MA1343_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m539_MA1803_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m483_MA1744_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m481_MA1742_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m485_MA1746_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m657_UN0001_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m681_UN0038_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_24/merged_consensuses/node_8/cluster_24_node_8_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m759_UN0428_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m537_MA1801_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m705_UN0073_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m337_MA1343_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m539_MA1803_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m483_MA1744_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m481_MA1742_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m485_MA1746_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m657_UN0001_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m681_UN0038_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_24/merged_consensuses/node_9/cluster_24_node_9_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_24/merged_consensuses/node_7/cluster_24_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_24 -name cluster_24 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_24/merged_consensuses/node_7/cluster_24_node_7_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_24/merged_consensuses/node_9/cluster_24_node_9_cat.tf -v 0 -in_format tf -out_format tf -id cluster_24 -name cluster_24 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_24/merged_consensuses/node_9/cluster_24_node_9_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_24/merged_consensuses/node_8/cluster_24_node_8_cat.tf -v 0 -in_format tf -out_format tf -id cluster_24 -name cluster_24 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_24/merged_consensuses/node_8/cluster_24_node_8_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_24/merged_consensuses/node_7/cluster_24_nb_motifs_8.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194647_8fX97p


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_24/merged_consensuses/node_9/cluster_24_nb_motifs_10.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194647_9wRyZp


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_24/merged_consensuses/node_8/cluster_24_nb_motifs_9.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194647_izMCtL


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_24/merged_consensuses/node_7/cluster_24_node_7_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_24/merged_consensuses/node_9/cluster_24_node_9_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_24/merged_consensuses/node_8/cluster_24_node_8_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m218_MA1197_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m22_MA0557_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_25/merged_consensuses/node_1/cluster_25_node_1_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m371_MA1382_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m218_MA1197_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m22_MA0557_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_25/merged_consensuses/node_2/cluster_25_node_2_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m86_MA0969_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m87_MA0970_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_25/merged_consensuses/node_3/cluster_25_node_3_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_25/merged_consensuses/node_2/cluster_25_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_25 -name cluster_25 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_25/merged_consensuses/node_2/cluster_25_node_2_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_25/merged_consensuses/node_3/cluster_25_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_25 -name cluster_25 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_25/merged_consensuses/node_3/cluster_25_node_3_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_25/merged_consensuses/node_1/cluster_25_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_25 -name cluster_25 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_25/merged_consensuses/node_1/cluster_25_node_1_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_25/merged_consensuses/node_3/cluster_25_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194650_hnrkSo


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_25/merged_consensuses/node_2/cluster_25_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194650_mHt2Ax


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_25/merged_consensuses/node_1/cluster_25_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194650_2QnvJ6


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_25/merged_consensuses/node_3/cluster_25_node_3_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_25/merged_consensuses/node_2/cluster_25_node_2_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_25/merged_consensuses/node_1/cluster_25_node_1_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m345_MA1352_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m349_MA1356_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_26/merged_consensuses/node_1/cluster_26_node_1_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_26/merged_consensuses/node_1/cluster_26_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_26 -name cluster_26 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_26/merged_consensuses/node_1/cluster_26_node_1_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_26/merged_consensuses/node_1/cluster_26_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194652_mQGTWW


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m406_MA1426_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m589_MA2029_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_25/merged_consensuses/node_4/cluster_25_node_4_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m569_MA1834_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m762_UN0431_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_25/merged_consensuses/node_6/cluster_25_node_6_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m719_UN0362_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m371_MA1382_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m218_MA1197_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m22_MA0557_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_25/merged_consensuses/node_5/cluster_25_node_5_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_26/merged_consensuses/node_1/cluster_26_node_1_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_25/merged_consensuses/node_4/cluster_25_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_25 -name cluster_25 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_25/merged_consensuses/node_4/cluster_25_node_4_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_25/merged_consensuses/node_6/cluster_25_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_25 -name cluster_25 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_25/merged_consensuses/node_6/cluster_25_node_6_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_25/merged_consensuses/node_5/cluster_25_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_25 -name cluster_25 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_25/merged_consensuses/node_5/cluster_25_node_5_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_25/merged_consensuses/node_6/cluster_25_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194653_w8YuSm


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_25/merged_consensuses/node_4/cluster_25_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194653_nS7y59


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_25/merged_consensuses/node_5/cluster_25_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194653_k3K7KQ


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_25/merged_consensuses/node_4/cluster_25_node_4_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_25/merged_consensuses/node_6/cluster_25_node_6_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_25/merged_consensuses/node_5/cluster_25_node_5_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m347_MA1354_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m345_MA1352_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m349_MA1356_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_26/merged_consensuses/node_2/cluster_26_node_2_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_26/merged_consensuses/node_2/cluster_26_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_26 -name cluster_26 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_26/merged_consensuses/node_2/cluster_26_node_2_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m37_MA0574_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m39_MA0576_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m505_MA1767_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m517_MA1779_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m502_MA1764_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m564_MA1829_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m296_MA1294_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m295_MA1293_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m294_MA1292_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m586_MA2026_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m428_MA2007_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m585_MA2025_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m504_MA1766_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m584_MA2024_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m516_MA1778_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m588_MA2028_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m510_MA1772_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m513_MA1775_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m508_MA1770_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m503_MA1765_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m501_MA1762_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m507_MA1769_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m515_MA1777_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m137_MA1037_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m429_MA2008_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m518_MA1780_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m138_MA1038_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m394_MA1408_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m716_UN0355_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m141_MA1041_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m142_MA1042_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m709_UN0078_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m139_MA1039_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m695_UN0057_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m136_MA1036_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m140_MA1040_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_42/cluster_19_node_42_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_42/cluster_19_node_42_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_42/cluster_19_node_42_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_26/merged_consensuses/node_2/cluster_26_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194655_98mKO0


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_42/cluster_19_nb_motifs_36.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194655_QWwC4N


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m86_MA0969_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m87_MA0970_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m719_UN0362_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m371_MA1382_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m218_MA1197_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m22_MA0557_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_25/merged_consensuses/node_7/cluster_25_node_7_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m569_MA1834_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m762_UN0431_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m86_MA0969_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m87_MA0970_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m719_UN0362_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m371_MA1382_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m218_MA1197_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m22_MA0557_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_25/merged_consensuses/node_8/cluster_25_node_8_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_26/merged_consensuses/node_2/cluster_26_node_2_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_25/merged_consensuses/node_7/cluster_25_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_25 -name cluster_25 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_25/merged_consensuses/node_7/cluster_25_node_7_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_25/merged_consensuses/node_8/cluster_25_node_8_cat.tf -v 0 -in_format tf -out_format tf -id cluster_25 -name cluster_25 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_25/merged_consensuses/node_8/cluster_25_node_8_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_42/cluster_19_node_42_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_25/merged_consensuses/node_7/cluster_25_nb_motifs_6.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194656_1PnxMn


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_25/merged_consensuses/node_8/cluster_25_nb_motifs_8.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194656_QN9xhE


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m406_MA1426_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m589_MA2029_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m569_MA1834_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m762_UN0431_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m86_MA0969_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m87_MA0970_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m719_UN0362_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m371_MA1382_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m218_MA1197_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m22_MA0557_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_25/merged_consensuses/node_9/cluster_25_node_9_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_25/merged_consensuses/node_7/cluster_25_node_7_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_25/merged_consensuses/node_8/cluster_25_node_8_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_25/merged_consensuses/node_9/cluster_25_node_9_cat.tf -v 0 -in_format tf -out_format tf -id cluster_25 -name cluster_25 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_25/merged_consensuses/node_9/cluster_25_node_9_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_25/merged_consensuses/node_9/cluster_25_nb_motifs_10.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194657_U5SHnY


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_25/merged_consensuses/node_9/cluster_25_node_9_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m382_MA1402_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m384_MA1404_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_27/merged_consensuses/node_1/cluster_27_node_1_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m383_MA1403_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m382_MA1402_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m384_MA1404_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_27/merged_consensuses/node_2/cluster_27_node_2_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m402_MA1416_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m383_MA1403_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m382_MA1402_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m384_MA1404_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_27/merged_consensuses/node_3/cluster_27_node_3_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_27/merged_consensuses/node_1/cluster_27_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_27 -name cluster_27 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_27/merged_consensuses/node_1/cluster_27_node_1_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_27/merged_consensuses/node_2/cluster_27_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_27 -name cluster_27 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_27/merged_consensuses/node_2/cluster_27_node_2_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_27/merged_consensuses/node_3/cluster_27_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_27 -name cluster_27 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_27/merged_consensuses/node_3/cluster_27_node_3_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_27/merged_consensuses/node_1/cluster_27_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194659_qKQkg3


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_27/merged_consensuses/node_3/cluster_27_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194659_4HWBjc


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_27/merged_consensuses/node_2/cluster_27_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194659_RXtFBS


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_27/merged_consensuses/node_1/cluster_27_node_1_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_27/merged_consensuses/node_3/cluster_27_node_3_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_27/merged_consensuses/node_2/cluster_27_node_2_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m361_MA1372_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m475_MA1736_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_28/merged_consensuses/node_1/cluster_28_node_1_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_28/merged_consensuses/node_1/cluster_28_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_28 -name cluster_28 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_28/merged_consensuses/node_1/cluster_28_node_1_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_28/merged_consensuses/node_1/cluster_28_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194703_arAil1


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_28/merged_consensuses/node_1/cluster_28_node_1_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m512_MA1774_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m519_MA1781_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m506_MA1768_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m590_MA2030_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m477_MA1738_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m601_MA2041_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m602_MA2042_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m509_MA1771_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m511_MA1773_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_43/cluster_19_node_43_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_43/cluster_19_node_43_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_43/cluster_19_node_43_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_43/cluster_19_nb_motifs_9.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194705_T8zYTN


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m370_MA1381_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m361_MA1372_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m475_MA1736_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_28/merged_consensuses/node_2/cluster_28_node_2_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_28/merged_consensuses/node_2/cluster_28_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_28 -name cluster_28 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_28/merged_consensuses/node_2/cluster_28_node_2_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_43/cluster_19_node_43_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_28/merged_consensuses/node_2/cluster_28_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194706_WQ8Pev


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_28/merged_consensuses/node_2/cluster_28_node_2_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m37_MA0574_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m39_MA0576_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m505_MA1767_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m517_MA1779_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m502_MA1764_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m564_MA1829_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m296_MA1294_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m295_MA1293_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m294_MA1292_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m586_MA2026_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m428_MA2007_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m585_MA2025_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m504_MA1766_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m584_MA2024_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m516_MA1778_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m588_MA2028_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m510_MA1772_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m513_MA1775_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m508_MA1770_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m503_MA1765_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m501_MA1762_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m507_MA1769_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m515_MA1777_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m137_MA1037_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m429_MA2008_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m518_MA1780_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m138_MA1038_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m394_MA1408_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m716_UN0355_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m141_MA1041_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m142_MA1042_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m709_UN0078_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m139_MA1039_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m695_UN0057_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m136_MA1036_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m140_MA1040_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m512_MA1774_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m519_MA1781_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m506_MA1768_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m590_MA2030_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m477_MA1738_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m601_MA2041_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m602_MA2042_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m509_MA1771_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m511_MA1773_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_44/cluster_19_node_44_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_44/cluster_19_node_44_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_44/cluster_19_node_44_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_44/cluster_19_nb_motifs_45.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194709_5eMwPF


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m459_MA1686_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m463_MA1690_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_29/merged_consensuses/node_1/cluster_29_node_1_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m468_MA1695_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m459_MA1686_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m463_MA1690_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_29/merged_consensuses/node_2/cluster_29_node_2_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m469_MA1696_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m468_MA1695_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m459_MA1686_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m463_MA1690_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_29/merged_consensuses/node_3/cluster_29_node_3_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_29/merged_consensuses/node_1/cluster_29_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_29 -name cluster_29 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_29/merged_consensuses/node_1/cluster_29_node_1_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_29/merged_consensuses/node_2/cluster_29_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_29 -name cluster_29 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_29/merged_consensuses/node_2/cluster_29_node_2_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_29/merged_consensuses/node_3/cluster_29_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_29 -name cluster_29 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_29/merged_consensuses/node_3/cluster_29_node_3_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_19/merged_consensuses/node_44/cluster_19_node_44_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_29/merged_consensuses/node_1/cluster_29_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194710_kZRNPJ


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_29/merged_consensuses/node_2/cluster_29_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194710_TJQYR8


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_29/merged_consensuses/node_3/cluster_29_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194710_Bz8vhp


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_29/merged_consensuses/node_2/cluster_29_node_2_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_29/merged_consensuses/node_1/cluster_29_node_1_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_29/merged_consensuses/node_3/cluster_29_node_3_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m458_MA1685_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m469_MA1696_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m468_MA1695_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m459_MA1686_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m463_MA1690_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_29/merged_consensuses/node_4/cluster_29_node_4_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_29/merged_consensuses/node_4/cluster_29_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_29 -name cluster_29 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_29/merged_consensuses/node_4/cluster_29_node_4_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_29/merged_consensuses/node_4/cluster_29_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194718_jAuurf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_29/merged_consensuses/node_4/cluster_29_node_4_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m460_MA1687_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m458_MA1685_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m469_MA1696_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m468_MA1695_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m459_MA1686_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m463_MA1690_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_29/merged_consensuses/node_5/cluster_29_node_5_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_29/merged_consensuses/node_5/cluster_29_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_29 -name cluster_29 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_29/merged_consensuses/node_5/cluster_29_node_5_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_29/merged_consensuses/node_5/cluster_29_nb_motifs_6.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194720_mXYYi9


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_29/merged_consensuses/node_5/cluster_29_node_5_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m432_MA1245_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m444_MA1005_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m438_MA0976_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m656_MA1001_3_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_2/cluster_3_node_2_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m599_MA2039_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m600_MA2040_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_3/cluster_3_node_3_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_3/cluster_3_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_3/cluster_3_node_3_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_2/cluster_3_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_2/cluster_3_node_2_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_3/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194722_by7Htx


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_2/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194722_qETGSn


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194722_1SnzrL


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_2/cluster_3_node_2_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_3/cluster_3_node_3_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m255_MA1247_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m259_MA1252_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_4/cluster_3_node_4_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m683_UN0040_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m688_UN0046_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_5/cluster_3_node_5_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_5/cluster_3_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_5/cluster_3_node_5_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_4/cluster_3_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_4/cluster_3_node_4_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_5/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194725_N3zGDp


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_4/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194725_6fuNAB


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m556_MA1821_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m567_MA1832_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_6/cluster_3_node_6_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_4/cluster_3_node_4_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_5/cluster_3_node_5_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_6/cluster_3_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_6/cluster_3_node_6_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_6/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194726_RPMIgJ


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_6/cluster_3_node_6_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m150_MA1051_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m151_MA1053_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_7/cluster_3_node_7_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m236_MA1221_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m255_MA1247_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m259_MA1252_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_8/cluster_3_node_8_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_7/cluster_3_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_7/cluster_3_node_7_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_8/cluster_3_node_8_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_8/cluster_3_node_8_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_7/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194728_Atugog


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_8/cluster_3_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194728_ZdiGF6


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_7/cluster_3_node_7_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_8/cluster_3_node_8_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m107_MA1004_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m31_MA0567_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_9/cluster_3_node_9_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m239_MA1225_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m236_MA1221_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m255_MA1247_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m259_MA1252_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_10/cluster_3_node_10_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_10/cluster_3_node_10_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_10/cluster_3_node_10_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_9/cluster_3_node_9_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_9/cluster_3_node_9_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_10/cluster_3_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194731_M4crfZ


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_9/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194731_WDn0G8


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_10/cluster_3_node_10_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_9/cluster_3_node_9_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m237_MA1222_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m257_MA1250_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_11/cluster_3_node_11_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m148_MA1049_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m107_MA1004_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m31_MA0567_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_13/cluster_3_node_13_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m91_MA0975_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m150_MA1051_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m151_MA1053_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_12/cluster_3_node_12_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_11/cluster_3_node_11_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_11/cluster_3_node_11_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_13/cluster_3_node_13_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_13/cluster_3_node_13_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_12/cluster_3_node_12_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_12/cluster_3_node_12_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_11/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194734_lAGuhT


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_13/cluster_3_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194734_zo5mYN


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_12/cluster_3_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194734_OFNBH1


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_11/cluster_3_node_11_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_13/cluster_3_node_13_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_12/cluster_3_node_12_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m544_MA1809_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m576_MA2016_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_30/merged_consensuses/node_1/cluster_30_node_1_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m392_MA1405_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m544_MA1809_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m576_MA2016_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_30/merged_consensuses/node_2/cluster_30_node_2_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m701_UN0067_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m392_MA1405_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m544_MA1809_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m576_MA2016_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_30/merged_consensuses/node_3/cluster_30_node_3_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m244_MA1232_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m256_MA1248_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_14/cluster_3_node_14_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m492_MA1753_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m237_MA1222_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m257_MA1250_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_15/cluster_3_node_15_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m683_UN0040_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m688_UN0046_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m148_MA1049_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m107_MA1004_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m31_MA0567_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_16/cluster_3_node_16_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_30/merged_consensuses/node_3/cluster_30_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_30 -name cluster_30 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_30/merged_consensuses/node_3/cluster_30_node_3_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_30/merged_consensuses/node_2/cluster_30_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_30 -name cluster_30 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_30/merged_consensuses/node_2/cluster_30_node_2_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_30/merged_consensuses/node_1/cluster_30_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_30 -name cluster_30 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_30/merged_consensuses/node_1/cluster_30_node_1_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_14/cluster_3_node_14_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_14/cluster_3_node_14_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_15/cluster_3_node_15_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_15/cluster_3_node_15_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_16/cluster_3_node_16_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_16/cluster_3_node_16_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_30/merged_consensuses/node_2/cluster_30_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194737_Bl7x7x


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_30/merged_consensuses/node_1/cluster_30_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194737_MsKC1h


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_30/merged_consensuses/node_3/cluster_30_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194737_iwIWYh


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_16/cluster_3_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194737_5RftYl


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_15/cluster_3_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194737_kS9kZn


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_30/merged_consensuses/node_2/cluster_30_node_2_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_30/merged_consensuses/node_1/cluster_30_node_1_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_30/merged_consensuses/node_3/cluster_30_node_3_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_16/cluster_3_node_16_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_14/cluster_3_node_14_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_15/cluster_3_node_15_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m106_MA0998_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m717_UN0357_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_17/cluster_3_node_17_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m261_MA1256_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m262_MA1257_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_19/cluster_3_node_19_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m269_MA1264_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m239_MA1225_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m236_MA1221_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m255_MA1247_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m259_MA1252_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_18/cluster_3_node_18_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_17/cluster_3_node_17_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_17/cluster_3_node_17_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_18/cluster_3_node_18_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_18/cluster_3_node_18_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_19/cluster_3_node_19_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_19/cluster_3_node_19_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_17/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194740_LNrOYE


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_19/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194740_vNnRnM


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_18/cluster_3_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194740_BYoh0A


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m550_MA1815_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m739_UN0406_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_31/merged_consensuses/node_1/cluster_31_node_1_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_17/cluster_3_node_17_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_19/cluster_3_node_19_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_18/cluster_3_node_18_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_31/merged_consensuses/node_1/cluster_31_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_31 -name cluster_31 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_31/merged_consensuses/node_1/cluster_31_node_1_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_31/merged_consensuses/node_1/cluster_31_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194741_T0Amqv


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_31/merged_consensuses/node_1/cluster_31_node_1_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m386_MA1000_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m573_MA2013_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_21/cluster_3_node_21_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m554_MA1819_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m555_MA1820_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_22/cluster_3_node_22_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m134_MA1034_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m683_UN0040_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m688_UN0046_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m148_MA1049_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m107_MA1004_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m31_MA0567_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_20/cluster_3_node_20_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_20/cluster_3_node_20_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_20/cluster_3_node_20_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_22/cluster_3_node_22_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_22/cluster_3_node_22_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_21/cluster_3_node_21_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_21/cluster_3_node_21_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_20/cluster_3_nb_motifs_6.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194743_ivD8Gr


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_22/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194743_X1bk01


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_21/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194743_eXg5Q2


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_20/cluster_3_node_20_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_22/cluster_3_node_22_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_21/cluster_3_node_21_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m413_MA1661_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m433_MA1365_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_32/merged_consensuses/node_1/cluster_32_node_1_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m228_MA1208_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m413_MA1661_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m433_MA1365_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_32/merged_consensuses/node_2/cluster_32_node_2_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m356_MA1366_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m228_MA1208_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m413_MA1661_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m433_MA1365_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_32/merged_consensuses/node_3/cluster_32_node_3_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_32/merged_consensuses/node_1/cluster_32_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_32 -name cluster_32 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_32/merged_consensuses/node_1/cluster_32_node_1_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_32/merged_consensuses/node_3/cluster_32_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_32 -name cluster_32 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_32/merged_consensuses/node_3/cluster_32_node_3_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_32/merged_consensuses/node_2/cluster_32_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_32 -name cluster_32 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_32/merged_consensuses/node_2/cluster_32_node_2_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_32/merged_consensuses/node_1/cluster_32_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194745_IlwM0S


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_32/merged_consensuses/node_3/cluster_32_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194745_LpNcSf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_32/merged_consensuses/node_2/cluster_32_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194745_9qetQC


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m553_MA1818_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m556_MA1821_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m567_MA1832_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_23/cluster_3_node_23_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_32/merged_consensuses/node_1/cluster_32_node_1_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_32/merged_consensuses/node_3/cluster_32_node_3_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_32/merged_consensuses/node_2/cluster_32_node_2_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_23/cluster_3_node_23_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_23/cluster_3_node_23_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_23/cluster_3_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194746_RwSZI4


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m249_MA1240_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m267_MA1262_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_24/cluster_3_node_24_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_23/cluster_3_node_23_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_24/cluster_3_node_24_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_24/cluster_3_node_24_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_24/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194747_yHhop1


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_24/cluster_3_node_24_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m366_MA1377_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m367_MA1378_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_33/merged_consensuses/node_1/cluster_33_node_1_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m35_MA0571_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m366_MA1377_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m367_MA1378_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_33/merged_consensuses/node_2/cluster_33_node_2_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m246_MA1235_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m35_MA0571_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m366_MA1377_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m367_MA1378_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_33/merged_consensuses/node_3/cluster_33_node_3_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m248_MA1239_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m249_MA1240_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m267_MA1262_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_25/cluster_3_node_25_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_33/merged_consensuses/node_1/cluster_33_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_33 -name cluster_33 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_33/merged_consensuses/node_1/cluster_33_node_1_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_33/merged_consensuses/node_3/cluster_33_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_33 -name cluster_33 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_33/merged_consensuses/node_3/cluster_33_node_3_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_33/merged_consensuses/node_2/cluster_33_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_33 -name cluster_33 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_33/merged_consensuses/node_2/cluster_33_node_2_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_25/cluster_3_node_25_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_25/cluster_3_node_25_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_33/merged_consensuses/node_1/cluster_33_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194750_ZYhWv6


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_33/merged_consensuses/node_2/cluster_33_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194750_4oM45D


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_33/merged_consensuses/node_3/cluster_33_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194750_z7j956


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_25/cluster_3_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194750_i2ZvVZ


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_33/merged_consensuses/node_1/cluster_33_node_1_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_33/merged_consensuses/node_3/cluster_33_node_3_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_33/merged_consensuses/node_2/cluster_33_node_2_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_25/cluster_3_node_25_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m94_MA0979_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m134_MA1034_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m683_UN0040_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m688_UN0046_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m148_MA1049_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m107_MA1004_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m31_MA0567_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_26/cluster_3_node_26_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_26/cluster_3_node_26_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_26/cluster_3_node_26_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_26/cluster_3_nb_motifs_7.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194753_AVpW9V


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m348_MA1355_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m472_MA1733_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_34/merged_consensuses/node_1/cluster_34_node_1_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m346_MA1353_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m592_MA2032_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_34/merged_consensuses/node_2/cluster_34_node_2_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m348_MA1355_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m472_MA1733_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m346_MA1353_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m592_MA2032_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_34/merged_consensuses/node_3/cluster_34_node_3_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m45_MA0583_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m766_UN0687_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_35/merged_consensuses/node_1/cluster_35_node_1_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_26/cluster_3_node_26_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_34/merged_consensuses/node_2/cluster_34_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_34 -name cluster_34 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_34/merged_consensuses/node_2/cluster_34_node_2_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_34/merged_consensuses/node_1/cluster_34_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_34 -name cluster_34 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_34/merged_consensuses/node_1/cluster_34_node_1_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_34/merged_consensuses/node_3/cluster_34_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_34 -name cluster_34 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_34/merged_consensuses/node_3/cluster_34_node_3_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_35/merged_consensuses/node_1/cluster_35_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_35 -name cluster_35 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_35/merged_consensuses/node_1/cluster_35_node_1_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_34/merged_consensuses/node_2/cluster_34_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194754_M8eUax


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_34/merged_consensuses/node_1/cluster_34_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194754_suJUry


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_34/merged_consensuses/node_3/cluster_34_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194754_h7Hbfa


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_35/merged_consensuses/node_1/cluster_35_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194754_e0meZM


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_34/merged_consensuses/node_2/cluster_34_node_2_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_34/merged_consensuses/node_1/cluster_34_node_1_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_35/merged_consensuses/node_1/cluster_35_node_1_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_34/merged_consensuses/node_3/cluster_34_node_3_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m566_MA1831_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m714_UN0353_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_27/cluster_3_node_27_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m247_MA1236_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m254_MA1246_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_28/cluster_3_node_28_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_27/cluster_3_node_27_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_27/cluster_3_node_27_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_28/cluster_3_node_28_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_28/cluster_3_node_28_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_27/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194756_AqcVJE


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_28/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194756_7YRZu5


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m130_MA1030_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m687_UN0044_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_34/merged_consensuses/node_4/cluster_34_node_4_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m712_UN0276_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m130_MA1030_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m687_UN0044_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_34/merged_consensuses/node_5/cluster_34_node_5_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m492_MA1753_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m237_MA1222_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m257_MA1250_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m269_MA1264_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m239_MA1225_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m236_MA1221_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m255_MA1247_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m259_MA1252_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_29/cluster_3_node_29_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_27/cluster_3_node_27_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_28/cluster_3_node_28_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_34/merged_consensuses/node_4/cluster_34_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_34 -name cluster_34 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_34/merged_consensuses/node_4/cluster_34_node_4_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_34/merged_consensuses/node_5/cluster_34_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_34 -name cluster_34 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_34/merged_consensuses/node_5/cluster_34_node_5_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_29/cluster_3_node_29_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_29/cluster_3_node_29_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_34/merged_consensuses/node_4/cluster_34_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194757_Hu1gbE


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_34/merged_consensuses/node_5/cluster_34_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194757_hLNuhl


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_29/cluster_3_nb_motifs_8.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194757_wJ4RP4


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m29_MA0564_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m43_MA0581_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_36/merged_consensuses/node_1/cluster_36_node_1_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m446_MA0565_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m29_MA0564_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m43_MA0581_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_36/merged_consensuses/node_2/cluster_36_node_2_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m545_MA1810_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m446_MA0565_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m29_MA0564_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m43_MA0581_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_36/merged_consensuses/node_3/cluster_36_node_3_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m348_MA1355_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m472_MA1733_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m346_MA1353_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m592_MA2032_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m712_UN0276_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m130_MA1030_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m687_UN0044_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_34/merged_consensuses/node_6/cluster_34_node_6_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_34/merged_consensuses/node_4/cluster_34_node_4_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_34/merged_consensuses/node_5/cluster_34_node_5_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_36/merged_consensuses/node_1/cluster_36_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_36 -name cluster_36 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_36/merged_consensuses/node_1/cluster_36_node_1_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_36/merged_consensuses/node_3/cluster_36_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_36 -name cluster_36 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_36/merged_consensuses/node_3/cluster_36_node_3_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_36/merged_consensuses/node_2/cluster_36_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_36 -name cluster_36 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_36/merged_consensuses/node_2/cluster_36_node_2_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_29/cluster_3_node_29_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_34/merged_consensuses/node_6/cluster_34_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_34 -name cluster_34 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_34/merged_consensuses/node_6/cluster_34_node_6_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_36/merged_consensuses/node_1/cluster_36_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194758_ya7ziT


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_36/merged_consensuses/node_3/cluster_36_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194758_oZSNJj


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_36/merged_consensuses/node_2/cluster_36_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194758_MM8Qas


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_34/merged_consensuses/node_6/cluster_34_nb_motifs_7.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194758_mFxrZs


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_36/merged_consensuses/node_1/cluster_36_node_1_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m253_MA1244_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m261_MA1256_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m262_MA1257_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_30/cluster_3_node_30_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_36/merged_consensuses/node_3/cluster_36_node_3_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_36/merged_consensuses/node_2/cluster_36_node_2_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_34/merged_consensuses/node_6/cluster_34_node_6_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_30/cluster_3_node_30_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_30/cluster_3_node_30_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_30/cluster_3_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194759_R7f27p


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_30/cluster_3_node_30_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m432_MA1245_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m444_MA1005_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m106_MA0998_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m717_UN0357_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_31/cluster_3_node_31_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_31/cluster_3_node_31_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_31/cluster_3_node_31_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_31/cluster_3_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194801_RuOBAD


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m36_MA0573_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m388_MA1026_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_37/merged_consensuses/node_1/cluster_37_node_1_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m725_UN0391_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m599_MA2039_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m600_MA2040_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_32/cluster_3_node_32_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m745_UN0412_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m725_UN0391_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m599_MA2039_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m600_MA2040_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_33/cluster_3_node_33_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_31/cluster_3_node_31_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_37/merged_consensuses/node_1/cluster_37_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_37 -name cluster_37 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_37/merged_consensuses/node_1/cluster_37_node_1_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_32/cluster_3_node_32_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_32/cluster_3_node_32_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_33/cluster_3_node_33_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_33/cluster_3_node_33_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_37/merged_consensuses/node_1/cluster_37_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194802_HkA12j


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_32/cluster_3_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194802_WReUfj


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_33/cluster_3_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194802_9D4X3J


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m18_MA0553_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m533_MA1796_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_38/merged_consensuses/node_1/cluster_38_node_1_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_37/merged_consensuses/node_1/cluster_37_node_1_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_33/cluster_3_node_33_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_32/cluster_3_node_32_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_38/merged_consensuses/node_1/cluster_38_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_38 -name cluster_38 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_38/merged_consensuses/node_1/cluster_38_node_1_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_38/merged_consensuses/node_1/cluster_38_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194803_RJJtEu


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_38/merged_consensuses/node_1/cluster_38_node_1_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m724_UN0390_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m36_MA0573_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m388_MA1026_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_37/merged_consensuses/node_2/cluster_37_node_2_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m568_MA1833_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m582_MA2022_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_34/cluster_3_node_34_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m552_MA1817_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m438_MA0976_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m656_MA1001_3_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_35/cluster_3_node_35_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_37/merged_consensuses/node_2/cluster_37_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_37 -name cluster_37 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_37/merged_consensuses/node_2/cluster_37_node_2_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_35/cluster_3_node_35_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_35/cluster_3_node_35_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_34/cluster_3_node_34_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_34/cluster_3_node_34_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_37/merged_consensuses/node_2/cluster_37_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194805_NPnbbw


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_34/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194805_l90aiY


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_35/cluster_3_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194805_qMNQAc


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_37/merged_consensuses/node_2/cluster_37_node_2_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m241_MA1228_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m248_MA1239_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m249_MA1240_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m267_MA1262_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_36/cluster_3_node_36_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_34/cluster_3_node_34_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_35/cluster_3_node_35_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_36/cluster_3_node_36_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_36/cluster_3_node_36_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_36/cluster_3_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194806_UO9IaW


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m462_MA1689_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m470_MA1697_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_39/merged_consensuses/node_1/cluster_39_node_1_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_36/cluster_3_node_36_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_39/merged_consensuses/node_1/cluster_39_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_39 -name cluster_39 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_39/merged_consensuses/node_1/cluster_39_node_1_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_39/merged_consensuses/node_1/cluster_39_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194807_UETNV3


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_39/merged_consensuses/node_1/cluster_39_node_1_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m330_MA1334_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m336_MA1341_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_node_1_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m333_MA1337_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m330_MA1334_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m336_MA1341_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_3/cluster_4_node_3_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m621_MA1068_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m623_MA1070_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_node_2_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m540_MA1804_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m432_MA1245_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m444_MA1005_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m106_MA0998_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m717_UN0357_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_37/cluster_3_node_37_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_node_1_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_node_2_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_3/cluster_4_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_3/cluster_4_node_3_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_37/cluster_3_node_37_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_37/cluster_3_node_37_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194809_bx07cG


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194809_3k0ZxQ


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_3/cluster_4_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194809_FDcMXi


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_37/cluster_3_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194809_5Yt7t3


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_node_2_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_node_1_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_3/cluster_4_node_3_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_37/cluster_3_node_37_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m461_MA1688_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m462_MA1689_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m470_MA1697_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_39/merged_consensuses/node_2/cluster_39_node_2_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m554_MA1819_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m555_MA1820_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m553_MA1818_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m556_MA1821_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m567_MA1832_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_38/cluster_3_node_38_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_39/merged_consensuses/node_2/cluster_39_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_39 -name cluster_39 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_39/merged_consensuses/node_2/cluster_39_node_2_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_38/cluster_3_node_38_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_38/cluster_3_node_38_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_39/merged_consensuses/node_2/cluster_39_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194811_btHhAS


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_38/cluster_3_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194811_njcP2c


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m335_MA1340_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m482_MA1743_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_4/cluster_4_node_4_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m454_MA1047_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m621_MA1068_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m623_MA1070_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_5/cluster_4_node_5_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m334_MA1339_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m344_MA1350_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_6/cluster_4_node_6_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m247_MA1236_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m254_MA1246_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m253_MA1244_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m261_MA1256_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m262_MA1257_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_39/cluster_3_node_39_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_39/merged_consensuses/node_2/cluster_39_node_2_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_38/cluster_3_node_38_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_4/cluster_4_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_4/cluster_4_node_4_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_5/cluster_4_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_5/cluster_4_node_5_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_6/cluster_4_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_6/cluster_4_node_6_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_39/cluster_3_node_39_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_39/cluster_3_node_39_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_4/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194812_ANNdT9


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_5/cluster_4_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194812_W0F9N0


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_6/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194812_kDjSr2


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_39/cluster_3_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194812_H6TlrN


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_5/cluster_4_node_5_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_6/cluster_4_node_6_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_4/cluster_4_node_4_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m270_MA1266_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m492_MA1753_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m237_MA1222_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m257_MA1250_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m269_MA1264_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m239_MA1225_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m236_MA1221_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m255_MA1247_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m259_MA1252_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_40/cluster_3_node_40_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_39/cluster_3_node_39_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_40/cluster_3_node_40_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_40/cluster_3_node_40_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_40/cluster_3_nb_motifs_9.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194813_v7y2H7


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_40/cluster_3_node_40_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m420_MA1675_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m575_MA2015_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_7/cluster_4_node_7_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m341_MA0968_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m343_MA1349_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_9/cluster_4_node_9_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m333_MA1337_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m330_MA1334_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m336_MA1341_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m335_MA1340_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m482_MA1743_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_8/cluster_4_node_8_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m700_UN0064_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m94_MA0979_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m134_MA1034_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m683_UN0040_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m688_UN0046_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m148_MA1049_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m107_MA1004_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m31_MA0567_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_41/cluster_3_node_41_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_7/cluster_4_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_7/cluster_4_node_7_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_8/cluster_4_node_8_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_8/cluster_4_node_8_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_9/cluster_4_node_9_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_9/cluster_4_node_9_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_41/cluster_3_node_41_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_41/cluster_3_node_41_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_9/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194815_w92UhL


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_8/cluster_4_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194815_P8ci7S


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_7/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194815_ltjtFh


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_41/cluster_3_nb_motifs_8.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194815_RmyBQ0


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_9/cluster_4_node_9_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_8/cluster_4_node_8_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_7/cluster_4_node_7_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_41/cluster_3_node_41_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m146_MA1046_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m750_UN0417_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_40/merged_consensuses/node_1/cluster_40_node_1_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m386_MA1000_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m573_MA2013_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m568_MA1833_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m582_MA2022_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_42/cluster_3_node_42_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_40/merged_consensuses/node_1/cluster_40_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_40 -name cluster_40 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_40/merged_consensuses/node_1/cluster_40_node_1_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_42/cluster_3_node_42_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_42/cluster_3_node_42_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_40/merged_consensuses/node_1/cluster_40_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194817_5PA34a


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_42/cluster_3_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194817_lhonrI


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m338_MA1344_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m341_MA0968_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m343_MA1349_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_10/cluster_4_node_10_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_40/merged_consensuses/node_1/cluster_40_node_1_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m58_MA0936_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m60_MA0939_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_12/cluster_4_node_12_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m622_MA1069_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m454_MA1047_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m621_MA1068_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m623_MA1070_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_11/cluster_4_node_11_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_42/cluster_3_node_42_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_11/cluster_4_node_11_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_11/cluster_4_node_11_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_10/cluster_4_node_10_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_10/cluster_4_node_10_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_12/cluster_4_node_12_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_12/cluster_4_node_12_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_12/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194818_D044ID


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_11/cluster_4_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194818_TogL2u


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_10/cluster_4_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194818_66wgV6


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_12/cluster_4_node_12_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m105_MA0997_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m91_MA0975_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m150_MA1051_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m151_MA1053_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_43/cluster_3_node_43_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_11/cluster_4_node_11_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_10/cluster_4_node_10_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_43/cluster_3_node_43_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_43/cluster_3_node_43_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_43/cluster_3_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194819_XeQKvd


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m12_MA0127_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m146_MA1046_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m750_UN0417_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_40/merged_consensuses/node_2/cluster_40_node_2_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_43/cluster_3_node_43_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_40/merged_consensuses/node_2/cluster_40_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_40 -name cluster_40 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_40/merged_consensuses/node_2/cluster_40_node_2_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_40/merged_consensuses/node_2/cluster_40_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194820_F39Zn3


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_40/merged_consensuses/node_2/cluster_40_node_2_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m405_MA1425_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m411_MA1659_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_13/cluster_4_node_13_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m331_MA1335_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m50_MA0588_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_14/cluster_4_node_14_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_13/cluster_4_node_13_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_13/cluster_4_node_13_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_14/cluster_4_node_14_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_14/cluster_4_node_14_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_13/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194821_h6Enwe


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_14/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194821_i3jPYC


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m339_MA1345_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m333_MA1337_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m330_MA1334_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m336_MA1341_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m335_MA1340_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m482_MA1743_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_15/cluster_4_node_15_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_13/cluster_4_node_13_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_14/cluster_4_node_14_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m552_MA1817_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m438_MA0976_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m656_MA1001_3_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m554_MA1819_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m555_MA1820_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m553_MA1818_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m556_MA1821_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m567_MA1832_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_44/cluster_3_node_44_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_15/cluster_4_node_15_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_15/cluster_4_node_15_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_44/cluster_3_node_44_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_44/cluster_3_node_44_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_15/cluster_4_nb_motifs_6.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194822_mbrxBC


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_44/cluster_3_nb_motifs_8.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194822_txBgfA


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_15/cluster_4_node_15_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_44/cluster_3_node_44_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m464_MA1691_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m466_MA1693_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_41/merged_consensuses/node_1/cluster_41_node_1_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m332_MA1336_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m340_MA1346_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_16/cluster_4_node_16_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m338_MA1344_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m341_MA0968_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m343_MA1349_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m339_MA1345_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m333_MA1337_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m330_MA1334_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m336_MA1341_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m335_MA1340_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m482_MA1743_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_17/cluster_4_node_17_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m104_MA0993_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m532_MA1795_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_45/cluster_3_node_45_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_41/merged_consensuses/node_1/cluster_41_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_41 -name cluster_41 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_41/merged_consensuses/node_1/cluster_41_node_1_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_16/cluster_4_node_16_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_16/cluster_4_node_16_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_17/cluster_4_node_17_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_17/cluster_4_node_17_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_45/cluster_3_node_45_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_45/cluster_3_node_45_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_41/merged_consensuses/node_1/cluster_41_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194824_hVLYC8


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_16/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194824_R4UiVo


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_17/cluster_4_nb_motifs_9.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194824_l4D6d1


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_45/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194824_sAu4tR


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_41/merged_consensuses/node_1/cluster_41_node_1_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m484_MA1745_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m334_MA1339_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m344_MA1350_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_18/cluster_4_node_18_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_16/cluster_4_node_16_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_17/cluster_4_node_17_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_45/cluster_3_node_45_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_18/cluster_4_node_18_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_18/cluster_4_node_18_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_18/cluster_4_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194825_BnhKt5


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_18/cluster_4_node_18_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m59_MA0937_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m58_MA0936_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m60_MA0939_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_19/cluster_4_node_19_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m622_MA1069_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m454_MA1047_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m621_MA1068_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m623_MA1070_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m332_MA1336_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m340_MA1346_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_20/cluster_4_node_20_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m417_MA1671_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m552_MA1817_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m438_MA0976_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m656_MA1001_3_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m554_MA1819_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m555_MA1820_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m553_MA1818_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m556_MA1821_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m567_MA1832_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_46/cluster_3_node_46_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_19/cluster_4_node_19_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_19/cluster_4_node_19_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_20/cluster_4_node_20_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_20/cluster_4_node_20_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_46/cluster_3_node_46_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_46/cluster_3_node_46_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_19/cluster_4_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194827_giJTrg


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_20/cluster_4_nb_motifs_6.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194827_vCWykT


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_46/cluster_3_nb_motifs_9.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194827_UhVzE9


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m342_MA1348_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m671_UN0022_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_21/cluster_4_node_21_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_20/cluster_4_node_20_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_19/cluster_4_node_19_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_46/cluster_3_node_46_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_21/cluster_4_node_21_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_21/cluster_4_node_21_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_21/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194828_cZwCL3


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_21/cluster_4_node_21_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m357_MA1367_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m538_MA1802_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_42/merged_consensuses/node_1/cluster_42_node_1_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m9_MA0097_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m405_MA1425_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m411_MA1659_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_22/cluster_4_node_22_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m619_MA0994_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m386_MA1000_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m573_MA2013_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m568_MA1833_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m582_MA2022_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_47/cluster_3_node_47_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_42/merged_consensuses/node_1/cluster_42_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_42 -name cluster_42 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_42/merged_consensuses/node_1/cluster_42_node_1_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_22/cluster_4_node_22_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_22/cluster_4_node_22_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_47/cluster_3_node_47_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_47/cluster_3_node_47_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_42/merged_consensuses/node_1/cluster_42_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194830_9BI9Gg


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_22/cluster_4_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194830_4x6QC9


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_47/cluster_3_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194830_WRjBCE


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_42/merged_consensuses/node_1/cluster_42_node_1_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m143_MA1043_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m522_MA1785_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_23/cluster_4_node_23_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m331_MA1335_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m50_MA0588_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m342_MA1348_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m671_UN0022_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_24/cluster_4_node_24_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_22/cluster_4_node_22_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_47/cluster_3_node_47_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_23/cluster_4_node_23_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_23/cluster_4_node_23_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_24/cluster_4_node_24_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_24/cluster_4_node_24_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_23/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194831_w0WnA8


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_24/cluster_4_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194831_uFFZq2


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_23/cluster_4_node_23_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_24/cluster_4_node_24_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m14_MA0129_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m706_UN0074_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_25/cluster_4_node_25_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_25/cluster_4_node_25_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_25/cluster_4_node_25_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_25/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194833_bq8UPj


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m122_MA1020_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m222_MA1202_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_43/merged_consensuses/node_1/cluster_43_node_1_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m403_MA1417_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m9_MA0097_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m405_MA1425_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m411_MA1659_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_26/cluster_4_node_26_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m338_MA1344_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m341_MA0968_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m343_MA1349_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m339_MA1345_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m333_MA1337_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m330_MA1334_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m336_MA1341_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m335_MA1340_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m482_MA1743_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m484_MA1745_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m334_MA1339_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m344_MA1350_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_27/cluster_4_node_27_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_25/cluster_4_node_25_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_43/merged_consensuses/node_1/cluster_43_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_43 -name cluster_43 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_43/merged_consensuses/node_1/cluster_43_node_1_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_26/cluster_4_node_26_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_26/cluster_4_node_26_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_27/cluster_4_node_27_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_27/cluster_4_node_27_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_43/merged_consensuses/node_1/cluster_43_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194834_tDwALq


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_26/cluster_4_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194834_Vmrygz


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_27/cluster_4_nb_motifs_12.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194834_Kbd52O


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_43/merged_consensuses/node_1/cluster_43_node_1_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_26/cluster_4_node_26_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_27/cluster_4_node_27_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m57_MA0935_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m143_MA1043_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m522_MA1785_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_28/cluster_4_node_28_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_28/cluster_4_node_28_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_28/cluster_4_node_28_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_28/cluster_4_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194836_42uIMa


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m523_MA1786_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m57_MA0935_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m143_MA1043_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m522_MA1785_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_29/cluster_4_node_29_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_28/cluster_4_node_28_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m251_MA1242_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m417_MA1671_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m552_MA1817_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m438_MA0976_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m656_MA1001_3_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m554_MA1819_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m555_MA1820_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m553_MA1818_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m556_MA1821_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m567_MA1832_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_48/cluster_3_node_48_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_29/cluster_4_node_29_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_29/cluster_4_node_29_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_48/cluster_3_node_48_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_48/cluster_3_node_48_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_29/cluster_4_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194837_TQpFG1


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_48/cluster_3_nb_motifs_10.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194837_ElNZN1


cp results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m265_MA1260_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_44/cluster_44_matrices_temp.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_44/cluster_44_matrices_temp.tf -from tf -to tf  -attr name cluster_44 -attr accession cluster_44 -set_attr merged_AC 'JASPAR_2022_plants_UNVALIDATED:::ERF013' -set_attr merged_ID 'ERF013' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 2 -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_44/cluster_44_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_29/cluster_4_node_29_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_48/cluster_3_node_48_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_30/cluster_4_node_30_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_30/cluster_4_node_30_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_44/cluster_44_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_30/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194838_S3BFgF


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m85_MA0967_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m14_MA0129_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m706_UN0074_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_31/cluster_4_node_31_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_30/cluster_4_node_30_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_31/cluster_4_node_31_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_31/cluster_4_node_31_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_31/cluster_4_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194839_uFa6U4


cp results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m514_MA1776_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_45/cluster_45_matrices_temp.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m59_MA0937_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m58_MA0936_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m60_MA0939_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m523_MA1786_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m57_MA0935_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m143_MA1043_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m522_MA1785_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_32/cluster_4_node_32_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_31/cluster_4_node_31_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_45/cluster_45_matrices_temp.tf -from tf -to tf  -attr name cluster_45 -attr accession cluster_45 -set_attr merged_AC 'JASPAR_2022_plants_UNVALIDATED:::MYB67' -set_attr merged_ID 'MYB67' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 2 -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_45/cluster_45_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_32/cluster_4_node_32_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_32/cluster_4_node_32_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_45/cluster_45_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_32/cluster_4_nb_motifs_7.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194840_OQB8O8


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m403_MA1417_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m9_MA0097_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m405_MA1425_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m411_MA1659_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m338_MA1344_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m341_MA0968_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m343_MA1349_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m339_MA1345_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m333_MA1337_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m330_MA1334_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m336_MA1341_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m335_MA1340_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m482_MA1743_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m484_MA1745_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m334_MA1339_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m344_MA1350_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_33/cluster_4_node_33_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_32/cluster_4_node_32_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_33/cluster_4_node_33_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_33/cluster_4_node_33_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_33/cluster_4_nb_motifs_16.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194841_BluGIE


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m51_MA0589_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m726_UN0392_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_46/merged_consensuses/node_1/cluster_46_node_1_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m8_MA0096_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m85_MA0967_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m14_MA0129_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m706_UN0074_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_34/cluster_4_node_34_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_46/merged_consensuses/node_1/cluster_46_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_46 -name cluster_46 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_46/merged_consensuses/node_1/cluster_46_node_1_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_33/cluster_4_node_33_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_34/cluster_4_node_34_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_34/cluster_4_node_34_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_46/merged_consensuses/node_1/cluster_46_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194842_p08UEh


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_34/cluster_4_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194842_4FgWo9


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_46/merged_consensuses/node_1/cluster_46_node_1_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m622_MA1069_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m454_MA1047_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m621_MA1068_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m623_MA1070_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m332_MA1336_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m340_MA1346_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m331_MA1335_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m50_MA0588_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m342_MA1348_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m671_UN0022_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_35/cluster_4_node_35_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_34/cluster_4_node_34_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_35/cluster_4_node_35_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_35/cluster_4_node_35_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_35/cluster_4_nb_motifs_10.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194843_QxZAEW


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_35/cluster_4_node_35_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m420_MA1675_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m575_MA2015_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m59_MA0937_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m58_MA0936_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m60_MA0939_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m523_MA1786_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m57_MA0935_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m143_MA1043_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m522_MA1785_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_36/cluster_4_node_36_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m493_MA1754_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m247_MA1236_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m254_MA1246_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m253_MA1244_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m261_MA1256_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m262_MA1257_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_49/cluster_3_node_49_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_49/cluster_3_node_49_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_49/cluster_3_node_49_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_36/cluster_4_node_36_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_36/cluster_4_node_36_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_49/cluster_3_nb_motifs_6.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194845_4rThnz


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_36/cluster_4_nb_motifs_9.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194845_wobFY0


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m741_UN0408_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m760_UN0429_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_47/merged_consensuses/node_1/cluster_47_node_1_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m763_UN0432_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m622_MA1069_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m454_MA1047_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m621_MA1068_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m623_MA1070_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m332_MA1336_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m340_MA1346_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m331_MA1335_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m50_MA0588_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m342_MA1348_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m671_UN0022_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_37/cluster_4_node_37_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_49/cluster_3_node_49_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_47/merged_consensuses/node_1/cluster_47_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_47 -name cluster_47 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_47/merged_consensuses/node_1/cluster_47_node_1_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_36/cluster_4_node_36_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_37/cluster_4_node_37_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_37/cluster_4_node_37_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_47/merged_consensuses/node_1/cluster_47_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194846_fFgwAu


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_37/cluster_4_nb_motifs_11.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194846_e4HUrC


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_47/merged_consensuses/node_1/cluster_47_node_1_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m145_MA1045_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m420_MA1675_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m575_MA2015_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m59_MA0937_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m58_MA0936_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m60_MA0939_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m523_MA1786_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m57_MA0935_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m143_MA1043_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m522_MA1785_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_38/cluster_4_node_38_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_37/cluster_4_node_37_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_38/cluster_4_node_38_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_38/cluster_4_node_38_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_38/cluster_4_nb_motifs_10.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194847_89IBUZ


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m577_MA2017_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m566_MA1831_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m714_UN0353_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_50/cluster_3_node_50_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_38/cluster_4_node_38_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_50/cluster_3_node_50_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_50/cluster_3_node_50_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_50/cluster_3_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194848_EP4uDY


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m742_UN0409_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m741_UN0408_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m760_UN0429_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_47/merged_consensuses/node_2/cluster_47_node_2_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m524_MA1787_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m606_MA2046_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m403_MA1417_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m9_MA0097_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m405_MA1425_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m411_MA1659_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m338_MA1344_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m341_MA0968_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m343_MA1349_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m339_MA1345_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m333_MA1337_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m330_MA1334_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m336_MA1341_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m335_MA1340_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m482_MA1743_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m484_MA1745_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m334_MA1339_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m344_MA1350_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_39/cluster_4_node_39_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_47/merged_consensuses/node_2/cluster_47_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_47 -name cluster_47 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_47/merged_consensuses/node_2/cluster_47_node_2_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_50/cluster_3_node_50_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_39/cluster_4_node_39_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_39/cluster_4_node_39_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_47/merged_consensuses/node_2/cluster_47_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194849_7TW1A8


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_39/cluster_4_nb_motifs_18.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194849_PsYtTA


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_47/merged_consensuses/node_2/cluster_47_node_2_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m763_UN0432_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m622_MA1069_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m454_MA1047_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m621_MA1068_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m623_MA1070_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m332_MA1336_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m340_MA1346_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m331_MA1335_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m50_MA0588_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m342_MA1348_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m671_UN0022_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m524_MA1787_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m606_MA2046_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m403_MA1417_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m9_MA0097_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m405_MA1425_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m411_MA1659_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m338_MA1344_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m341_MA0968_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m343_MA1349_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m339_MA1345_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m333_MA1337_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m330_MA1334_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m336_MA1341_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m335_MA1340_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m482_MA1743_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m484_MA1745_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m334_MA1339_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m344_MA1350_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_40/cluster_4_node_40_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_39/cluster_4_node_39_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_40/cluster_4_node_40_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_40/cluster_4_node_40_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_40/cluster_4_nb_motifs_29.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194850_1L3sSL


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m635_MA1231_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m270_MA1266_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m492_MA1753_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m237_MA1222_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m257_MA1250_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m269_MA1264_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m239_MA1225_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m236_MA1221_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m255_MA1247_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m259_MA1252_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_51/cluster_3_node_51_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m8_MA0096_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m85_MA0967_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m14_MA0129_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m706_UN0074_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m145_MA1045_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m420_MA1675_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m575_MA2015_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m59_MA0937_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m58_MA0936_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m60_MA0939_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m523_MA1786_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m57_MA0935_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m143_MA1043_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m522_MA1785_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_41/cluster_4_node_41_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_40/cluster_4_node_40_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_51/cluster_3_node_51_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_51/cluster_3_node_51_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_41/cluster_4_node_41_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_41/cluster_4_node_41_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_51/cluster_3_nb_motifs_10.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194851_Air1iY


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_41/cluster_4_nb_motifs_14.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194851_qPAh5s


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_51/cluster_3_node_51_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_41/cluster_4_node_41_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cp results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m736_UN0403_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_48/cluster_48_matrices_temp.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_48/cluster_48_matrices_temp.tf -from tf -to tf  -attr name cluster_48 -attr accession cluster_48 -set_attr merged_AC 'JASPAR_2022_plants_UNVALIDATED:::JGL' -set_attr merged_ID 'JGL' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 2 -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_48/cluster_48_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_48/cluster_48_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m619_MA0994_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m386_MA1000_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m573_MA2013_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m568_MA1833_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m582_MA2022_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m635_MA1231_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m270_MA1266_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m492_MA1753_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m237_MA1222_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m257_MA1250_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m269_MA1264_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m239_MA1225_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m236_MA1221_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m255_MA1247_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m259_MA1252_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_52/cluster_3_node_52_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m763_UN0432_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m622_MA1069_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m454_MA1047_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m621_MA1068_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m623_MA1070_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m332_MA1336_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m340_MA1346_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m331_MA1335_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m50_MA0588_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m342_MA1348_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m671_UN0022_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m524_MA1787_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m606_MA2046_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m403_MA1417_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m9_MA0097_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m405_MA1425_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m411_MA1659_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m338_MA1344_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m341_MA0968_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m343_MA1349_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m339_MA1345_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m333_MA1337_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m330_MA1334_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m336_MA1341_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m335_MA1340_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m482_MA1743_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m484_MA1745_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m334_MA1339_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m344_MA1350_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m8_MA0096_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m85_MA0967_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m14_MA0129_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m706_UN0074_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m145_MA1045_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m420_MA1675_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m575_MA2015_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m59_MA0937_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m58_MA0936_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m60_MA0939_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m523_MA1786_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m57_MA0935_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m143_MA1043_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m522_MA1785_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_42/cluster_4_node_42_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_52/cluster_3_node_52_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_52/cluster_3_node_52_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_42/cluster_4_node_42_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_42/cluster_4_node_42_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_52/cluster_3_nb_motifs_15.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194854_qbObHw


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_42/cluster_4_nb_motifs_43.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194854_im0cII


cp results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m447_MA1368_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_49/cluster_49_matrices_temp.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m540_MA1804_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m432_MA1245_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m444_MA1005_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m106_MA0998_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m717_UN0357_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m251_MA1242_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m417_MA1671_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m552_MA1817_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m438_MA0976_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m656_MA1001_3_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m554_MA1819_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m555_MA1820_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m553_MA1818_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m556_MA1821_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m567_MA1832_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_53/cluster_3_node_53_cat.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_49/cluster_49_matrices_temp.tf -from tf -to tf  -attr name cluster_49 -attr accession cluster_49 -set_attr merged_AC 'JASPAR_2022_plants_UNVALIDATED:::GT-4' -set_attr merged_ID 'GT-4' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 2 -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_49/cluster_49_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_52/cluster_3_node_52_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_4/merged_consensuses/node_42/cluster_4_node_42_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_53/cluster_3_node_53_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_53/cluster_3_node_53_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_49/cluster_49_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_53/cluster_3_nb_motifs_15.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194855_eDAsLj


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_53/cluster_3_node_53_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m421_MA1677_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m609_MA2049_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_2/cluster_5_node_2_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m431_MA2010_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m604_MA2044_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_node_1_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m594_MA2034_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m597_MA2037_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_3/cluster_5_node_3_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_3/cluster_5_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_3/cluster_5_node_3_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_2/cluster_5_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_2/cluster_5_node_2_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_node_1_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194857_OhSn70


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_3/cluster_5_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194857_Kg5HMo


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_2/cluster_5_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194857_VZkdar


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_node_1_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_2/cluster_5_node_2_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_3/cluster_5_node_3_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m425_MA2005_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m607_MA2047_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_4/cluster_5_node_4_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m431_MA2010_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m604_MA2044_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m425_MA2005_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m607_MA2047_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_5/cluster_5_node_5_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_4/cluster_5_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_4/cluster_5_node_4_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_5/cluster_5_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_5/cluster_5_node_5_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_4/cluster_5_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194900_pb61Ks


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_5/cluster_5_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194900_kpMMum


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m608_MA2048_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m613_MA2053_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_6/cluster_5_node_6_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_4/cluster_5_node_4_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_5/cluster_5_node_5_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m700_UN0064_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m94_MA0979_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m134_MA1034_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m683_UN0040_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m688_UN0046_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m148_MA1049_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m107_MA1004_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m31_MA0567_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m105_MA0997_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m91_MA0975_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m150_MA1051_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m151_MA1053_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_54/cluster_3_node_54_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_6/cluster_5_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_6/cluster_5_node_6_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_54/cluster_3_node_54_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_54/cluster_3_node_54_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_6/cluster_5_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194901_1UW21j


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_54/cluster_3_nb_motifs_12.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194901_nHhSur


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_6/cluster_5_node_6_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_54/cluster_3_node_54_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m596_MA2036_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m610_MA2050_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_7/cluster_5_node_7_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m445_MA0992_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m104_MA0993_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m532_MA1795_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_55/cluster_3_node_55_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_7/cluster_5_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_7/cluster_5_node_7_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_55/cluster_3_node_55_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_55/cluster_3_node_55_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_7/cluster_5_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194903_jwEW7W


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_55/cluster_3_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194903_YdnkM0


cp results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m733_UN0400_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_50/cluster_50_matrices_temp.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m603_MA2043_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m421_MA1677_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m609_MA2049_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_8/cluster_5_node_8_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m653_MA1674_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m594_MA2034_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m597_MA2037_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_9/cluster_5_node_9_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_7/cluster_5_node_7_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_50/cluster_50_matrices_temp.tf -from tf -to tf  -attr name cluster_50 -attr accession cluster_50 -set_attr merged_AC 'JASPAR_2022_plants_UNVALIDATED:::HMGB15' -set_attr merged_ID 'HMGB15' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 2 -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_50/cluster_50_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_9/cluster_5_node_9_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_9/cluster_5_node_9_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_55/cluster_3_node_55_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_8/cluster_5_node_8_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_8/cluster_5_node_8_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_50/cluster_50_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_9/cluster_5_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194904_92OAze


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_8/cluster_5_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194904_QqgVpS


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_8/cluster_5_node_8_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_9/cluster_5_node_9_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cp results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m765_UN0434_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_51/cluster_51_matrices_temp.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m431_MA2010_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m604_MA2044_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m425_MA2005_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m607_MA2047_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m596_MA2036_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m610_MA2050_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_10/cluster_5_node_10_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m419_MA1673_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m745_UN0412_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m725_UN0391_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m599_MA2039_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m600_MA2040_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_57/cluster_3_node_57_cat.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_51/cluster_51_matrices_temp.tf -from tf -to tf  -attr name cluster_51 -attr accession cluster_51 -set_attr merged_AC 'JASPAR_2022_plants_UNVALIDATED:::Zm00001d013777' -set_attr merged_ID 'Zm00001d013777' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 2 -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_51/cluster_51_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m241_MA1228_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m248_MA1239_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m249_MA1240_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m267_MA1262_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m619_MA0994_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m386_MA1000_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m573_MA2013_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m568_MA1833_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m582_MA2022_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m635_MA1231_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m270_MA1266_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m492_MA1753_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m237_MA1222_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m257_MA1250_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m269_MA1264_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m239_MA1225_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m236_MA1221_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m255_MA1247_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m259_MA1252_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_56/cluster_3_node_56_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_10/cluster_5_node_10_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_10/cluster_5_node_10_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_57/cluster_3_node_57_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_57/cluster_3_node_57_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_56/cluster_3_node_56_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_56/cluster_3_node_56_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_51/cluster_51_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_10/cluster_5_nb_motifs_6.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194906_EFul93


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_57/cluster_3_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194906_DFtS3U


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_56/cluster_3_nb_motifs_19.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194906_Fafm3S


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m655_MA1678_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m608_MA2048_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m613_MA2053_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_11/cluster_5_node_11_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_10/cluster_5_node_10_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_11/cluster_5_node_11_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_11/cluster_5_node_11_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_57/cluster_3_node_57_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_56/cluster_3_node_56_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_11/cluster_5_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194907_oUQ31n


cp results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m232_MA1214_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_52/cluster_52_matrices_temp.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m648_MA1663_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m603_MA2043_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m421_MA1677_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m609_MA2049_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_12/cluster_5_node_12_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_11/cluster_5_node_11_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_52/cluster_52_matrices_temp.tf -from tf -to tf  -attr name cluster_52 -attr accession cluster_52 -set_attr merged_AC 'JASPAR_2022_plants_UNVALIDATED:::ATHB-40' -set_attr merged_ID 'ATHB-40' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 2 -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_52/cluster_52_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_12/cluster_5_node_12_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_12/cluster_5_node_12_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_52/cluster_52_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_12/cluster_5_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194908_lYBQbl


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_12/cluster_5_node_12_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cp results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m490_MA1751_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_53/cluster_53_matrices_temp.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m598_MA2038_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m653_MA1674_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m594_MA2034_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m597_MA2037_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_13/cluster_5_node_13_cat.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_53/cluster_53_matrices_temp.tf -from tf -to tf  -attr name cluster_53 -attr accession cluster_53 -set_attr merged_AC 'JASPAR_2022_plants_UNVALIDATED:::EIL3' -set_attr merged_ID 'EIL3' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 2 -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_53/cluster_53_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_13/cluster_5_node_13_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_13/cluster_5_node_13_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_53/cluster_53_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_13/cluster_5_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194910_jzmZrW


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m144_MA1044_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m578_MA2018_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_14/cluster_5_node_14_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_13/cluster_5_node_13_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m266_MA1261_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m241_MA1228_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m248_MA1239_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m249_MA1240_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m267_MA1262_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m619_MA0994_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m386_MA1000_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m573_MA2013_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m568_MA1833_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m582_MA2022_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m635_MA1231_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m270_MA1266_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m492_MA1753_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m237_MA1222_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m257_MA1250_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m269_MA1264_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m239_MA1225_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m236_MA1221_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m255_MA1247_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m259_MA1252_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_58/cluster_3_node_58_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_14/cluster_5_node_14_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_14/cluster_5_node_14_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_58/cluster_3_node_58_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_58/cluster_3_node_58_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_14/cluster_5_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194911_jqMUal


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_58/cluster_3_nb_motifs_20.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194911_pphG1k


cp results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m732_UN0399_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_54/cluster_54_matrices_temp.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_14/cluster_5_node_14_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_54/cluster_54_matrices_temp.tf -from tf -to tf  -attr name cluster_54 -attr accession cluster_54 -set_attr merged_AC 'JASPAR_2022_plants_UNVALIDATED:::GEBP' -set_attr merged_ID 'GEBP' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 2 -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_54/cluster_54_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_58/cluster_3_node_58_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_54/cluster_54_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m647_MA1427_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m598_MA2038_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m653_MA1674_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m594_MA2034_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m597_MA2037_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_15/cluster_5_node_15_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m648_MA1663_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m603_MA2043_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m421_MA1677_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m609_MA2049_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m647_MA1427_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m598_MA2038_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m653_MA1674_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m594_MA2034_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m597_MA2037_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_16/cluster_5_node_16_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_15/cluster_5_node_15_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_15/cluster_5_node_15_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_16/cluster_5_node_16_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_16/cluster_5_node_16_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_15/cluster_5_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194913_aLHBxM


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_16/cluster_5_nb_motifs_9.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194913_ItLmLD


cp results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m738_UN0405_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_55/cluster_55_matrices_temp.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m431_MA2010_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m604_MA2044_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m425_MA2005_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m607_MA2047_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m596_MA2036_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m610_MA2050_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m648_MA1663_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m603_MA2043_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m421_MA1677_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m609_MA2049_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m647_MA1427_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m598_MA2038_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m653_MA1674_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m594_MA2034_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m597_MA2037_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_17/cluster_5_node_17_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_15/cluster_5_node_15_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_16/cluster_5_node_16_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_55/cluster_55_matrices_temp.tf -from tf -to tf  -attr name cluster_55 -attr accession cluster_55 -set_attr merged_AC 'JASPAR_2022_plants_UNVALIDATED:::MGH6_1' -set_attr merged_ID 'MGH6_1' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 2 -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_55/cluster_55_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_17/cluster_5_node_17_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_17/cluster_5_node_17_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_55/cluster_55_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_17/cluster_5_nb_motifs_15.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194914_ZrFBZe


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m108_MA1006_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m700_UN0064_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m94_MA0979_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m134_MA1034_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m683_UN0040_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m688_UN0046_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m148_MA1049_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m107_MA1004_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m31_MA0567_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m105_MA0997_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m91_MA0975_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m150_MA1051_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m151_MA1053_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_59/cluster_3_node_59_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_17/cluster_5_node_17_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_59/cluster_3_node_59_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_59/cluster_3_node_59_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_59/cluster_3_nb_motifs_13.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194915_2cC0rC


cp results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m400_MA1415_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_56/cluster_56_matrices_temp.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_56/cluster_56_matrices_temp.tf -from tf -to tf  -attr name cluster_56 -attr accession cluster_56 -set_attr merged_AC 'JASPAR_2022_plants_UNVALIDATED:::REF6' -set_attr merged_ID 'REF6' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 2 -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_56/cluster_56_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_59/cluster_3_node_59_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_56/cluster_56_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m558_MA1823_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m761_UN0430_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_18/cluster_5_node_18_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_18/cluster_5_node_18_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_18/cluster_5_node_18_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_18/cluster_5_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194917_9NW4AE


cp results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m547_MA1812_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_57/cluster_57_matrices_temp.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_18/cluster_5_node_18_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_57/cluster_57_matrices_temp.tf -from tf -to tf  -attr name cluster_57 -attr accession cluster_57 -set_attr merged_AC 'JASPAR_2022_plants_UNVALIDATED:::ASR1' -set_attr merged_ID 'ASR1' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 2 -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_57/cluster_57_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_57/cluster_57_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m655_MA1678_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m608_MA2048_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m613_MA2053_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m431_MA2010_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m604_MA2044_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m425_MA2005_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m607_MA2047_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m596_MA2036_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m610_MA2050_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m648_MA1663_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m603_MA2043_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m421_MA1677_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m609_MA2049_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m647_MA1427_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m598_MA2038_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m653_MA1674_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m594_MA2034_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m597_MA2037_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_19/cluster_5_node_19_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_19/cluster_5_node_19_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_19/cluster_5_node_19_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_19/cluster_5_nb_motifs_18.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194919_vVi2qP


cp results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m495_MA1756_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_58/cluster_58_matrices_temp.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m611_MA2051_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m144_MA1044_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m578_MA2018_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_20/cluster_5_node_20_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_19/cluster_5_node_19_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_58/cluster_58_matrices_temp.tf -from tf -to tf  -attr name cluster_58 -attr accession cluster_58 -set_attr merged_AC 'JASPAR_2022_plants_UNVALIDATED:::GRF9' -set_attr merged_ID 'GRF9' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 2 -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_58/cluster_58_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m240_MA1226_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m266_MA1261_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m241_MA1228_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m248_MA1239_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m249_MA1240_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m267_MA1262_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m619_MA0994_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m386_MA1000_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m573_MA2013_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m568_MA1833_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m582_MA2022_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m635_MA1231_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m270_MA1266_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m492_MA1753_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m237_MA1222_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m257_MA1250_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m269_MA1264_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m239_MA1225_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m236_MA1221_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m255_MA1247_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m259_MA1252_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_62/cluster_3_node_62_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m540_MA1804_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m432_MA1245_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m444_MA1005_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m106_MA0998_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m717_UN0357_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m251_MA1242_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m417_MA1671_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m552_MA1817_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m438_MA0976_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m656_MA1001_3_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m554_MA1819_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m555_MA1820_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m553_MA1818_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m556_MA1821_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m567_MA1832_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m108_MA1006_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m700_UN0064_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m94_MA0979_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m134_MA1034_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m683_UN0040_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m688_UN0046_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m148_MA1049_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m107_MA1004_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m31_MA0567_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m105_MA0997_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m91_MA0975_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m150_MA1051_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m151_MA1053_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_60/cluster_3_node_60_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m445_MA0992_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m104_MA0993_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m532_MA1795_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m540_MA1804_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m432_MA1245_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m444_MA1005_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m106_MA0998_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m717_UN0357_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m251_MA1242_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m417_MA1671_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m552_MA1817_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m438_MA0976_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m656_MA1001_3_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m554_MA1819_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m555_MA1820_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m553_MA1818_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m556_MA1821_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m567_MA1832_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m108_MA1006_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m700_UN0064_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m94_MA0979_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m134_MA1034_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m683_UN0040_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m688_UN0046_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m148_MA1049_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m107_MA1004_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m31_MA0567_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m105_MA0997_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m91_MA0975_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m150_MA1051_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m151_MA1053_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_61/cluster_3_node_61_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_20/cluster_5_node_20_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_20/cluster_5_node_20_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_62/cluster_3_node_62_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_62/cluster_3_node_62_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_60/cluster_3_node_60_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_60/cluster_3_node_60_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_61/cluster_3_node_61_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_61/cluster_3_node_61_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_58/cluster_58_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_20/cluster_5_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194920_1BJRNY


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_62/cluster_3_nb_motifs_21.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194920_jTtXm7


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_60/cluster_3_nb_motifs_28.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194920_4NRvfX


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_61/cluster_3_nb_motifs_31.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194920_B3HoDe


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_20/cluster_5_node_20_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_62/cluster_3_node_62_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_60/cluster_3_node_60_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_61/cluster_3_node_61_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cp results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m41_MA0579_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_59/cluster_59_matrices_temp.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m655_MA1678_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m608_MA2048_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m613_MA2053_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m431_MA2010_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m604_MA2044_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m425_MA2005_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m607_MA2047_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m596_MA2036_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m610_MA2050_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m648_MA1663_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m603_MA2043_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m421_MA1677_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m609_MA2049_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m647_MA1427_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m598_MA2038_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m653_MA1674_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m594_MA2034_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m597_MA2037_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m611_MA2051_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m144_MA1044_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m578_MA2018_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_21/cluster_5_node_21_cat.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_59/cluster_59_matrices_temp.tf -from tf -to tf  -attr name cluster_59 -attr accession cluster_59 -set_attr merged_AC 'JASPAR_2022_plants_UNVALIDATED:::CDC5' -set_attr merged_ID 'CDC5' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 2 -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_59/cluster_59_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_21/cluster_5_node_21_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_21/cluster_5_node_21_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_59/cluster_59_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_21/cluster_5_nb_motifs_21.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194922_JE0viL


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m654_MA1676_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m655_MA1678_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m608_MA2048_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m613_MA2053_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m431_MA2010_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m604_MA2044_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m425_MA2005_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m607_MA2047_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m596_MA2036_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m610_MA2050_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m648_MA1663_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m603_MA2043_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m421_MA1677_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m609_MA2049_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m647_MA1427_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m598_MA2038_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m653_MA1674_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m594_MA2034_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m597_MA2037_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m611_MA2051_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m144_MA1044_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m578_MA2018_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_22/cluster_5_node_22_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_21/cluster_5_node_21_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_22/cluster_5_node_22_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_22/cluster_5_node_22_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_22/cluster_5_nb_motifs_22.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194923_N4BUCb


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m450_MA1394_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m587_MA2027_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_1/cluster_6_node_1_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m197_MA1175_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m202_MA1181_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_2/cluster_6_node_2_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m194_MA1172_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m201_MA1180_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_3/cluster_6_node_3_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_22/cluster_5_node_22_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_1/cluster_6_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_1/cluster_6_node_1_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_2/cluster_6_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_2/cluster_6_node_2_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_3/cluster_6_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_3/cluster_6_node_3_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_2/cluster_6_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194924_D1IrdB


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_3/cluster_6_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194924_G9Deb7


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_1/cluster_6_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194924_szSfnf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_2/cluster_6_node_2_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_3/cluster_6_node_3_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_1/cluster_6_node_1_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m193_MA1171_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m675_UN0029_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_4/cluster_6_node_4_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m436_MA1393_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m450_MA1394_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m587_MA2027_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_5/cluster_6_node_5_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m195_MA1173_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m199_MA1177_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_6/cluster_6_node_6_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m558_MA1823_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m761_UN0430_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m654_MA1676_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m655_MA1678_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m608_MA2048_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m613_MA2053_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m431_MA2010_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m604_MA2044_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m425_MA2005_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m607_MA2047_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m596_MA2036_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m610_MA2050_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m648_MA1663_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m603_MA2043_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m421_MA1677_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m609_MA2049_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m647_MA1427_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m598_MA2038_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m653_MA1674_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m594_MA2034_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m597_MA2037_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m611_MA2051_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m144_MA1044_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m578_MA2018_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_23/cluster_5_node_23_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_4/cluster_6_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_4/cluster_6_node_4_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_5/cluster_6_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_5/cluster_6_node_5_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_6/cluster_6_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_6/cluster_6_node_6_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_23/cluster_5_node_23_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_23/cluster_5_node_23_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_4/cluster_6_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194927_tjCsnH


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_6/cluster_6_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194927_DCsmo9


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_5/cluster_6_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194927_L7VQDZ


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_23/cluster_5_nb_motifs_24.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194927_4aSEE6


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_4/cluster_6_node_4_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_5/cluster_6_node_5_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_6/cluster_6_node_6_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_5/merged_consensuses/node_23/cluster_5_node_23_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m493_MA1754_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m247_MA1236_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m254_MA1246_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m253_MA1244_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m261_MA1256_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m262_MA1257_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m240_MA1226_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m266_MA1261_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m241_MA1228_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m248_MA1239_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m249_MA1240_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m267_MA1262_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m619_MA0994_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m386_MA1000_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m573_MA2013_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m568_MA1833_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m582_MA2022_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m635_MA1231_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m270_MA1266_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m492_MA1753_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m237_MA1222_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m257_MA1250_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m269_MA1264_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m239_MA1225_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m236_MA1221_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m255_MA1247_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m259_MA1252_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_63/cluster_3_node_63_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_63/cluster_3_node_63_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_63/cluster_3_node_63_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_63/cluster_3_nb_motifs_27.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194929_yehE9Q


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m198_MA1176_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m646_MA1392_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_7/cluster_6_node_7_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m449_MA1391_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m195_MA1173_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m199_MA1177_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_8/cluster_6_node_8_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m193_MA1171_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m675_UN0029_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m436_MA1393_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m450_MA1394_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m587_MA2027_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_9/cluster_6_node_9_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_7/cluster_6_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_7/cluster_6_node_7_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_8/cluster_6_node_8_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_8/cluster_6_node_8_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_9/cluster_6_node_9_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_9/cluster_6_node_9_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_63/cluster_3_node_63_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_7/cluster_6_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194930_iS7qrD


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_9/cluster_6_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194930_GIrhZe


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_8/cluster_6_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194930_WXoJ08


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_7/cluster_6_node_7_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_9/cluster_6_node_9_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_8/cluster_6_node_8_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m196_MA1174_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m631_MA1178_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_11/cluster_6_node_11_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m191_MA1169_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m194_MA1172_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m201_MA1180_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_10/cluster_6_node_10_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m449_MA1391_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m195_MA1173_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m199_MA1177_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m196_MA1174_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m631_MA1178_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_12/cluster_6_node_12_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_10/cluster_6_node_10_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_10/cluster_6_node_10_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_11/cluster_6_node_11_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_11/cluster_6_node_11_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_12/cluster_6_node_12_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_12/cluster_6_node_12_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_10/cluster_6_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194933_eXWgfq


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_11/cluster_6_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194933_BVZmXI


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_12/cluster_6_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194933_JeC0tA


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_11/cluster_6_node_11_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_10/cluster_6_node_10_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_12/cluster_6_node_12_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m5_MA0054_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m197_MA1175_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m202_MA1181_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_13/cluster_6_node_13_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m414_MA1662_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m449_MA1391_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m195_MA1173_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m199_MA1177_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m196_MA1174_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m631_MA1178_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_15/cluster_6_node_15_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m193_MA1171_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m675_UN0029_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m436_MA1393_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m450_MA1394_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m587_MA2027_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m191_MA1169_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m194_MA1172_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m201_MA1180_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_14/cluster_6_node_14_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_13/cluster_6_node_13_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_13/cluster_6_node_13_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_15/cluster_6_node_15_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_15/cluster_6_node_15_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_14/cluster_6_node_14_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_14/cluster_6_node_14_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_13/cluster_6_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194936_7WCiIE


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_15/cluster_6_nb_motifs_6.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194936_pSEU8x


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_14/cluster_6_nb_motifs_8.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194936_S1zOAn


cp results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m52_MA0590_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_60/cluster_60_matrices_temp.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_13/cluster_6_node_13_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_14/cluster_6_node_14_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_15/cluster_6_node_15_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_60/cluster_60_matrices_temp.tf -from tf -to tf  -attr name cluster_60 -attr accession cluster_60 -set_attr merged_AC 'JASPAR_2022_plants_UNVALIDATED:::LFY' -set_attr merged_ID 'LFY' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 2 -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_60/cluster_60_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_60/cluster_60_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m543_MA1808_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m546_MA1811_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_1/cluster_7_node_1_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m77_MA0957_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m78_MA0958_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_3/cluster_7_node_3_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m754_UN0422_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m543_MA1808_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m546_MA1811_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_2/cluster_7_node_2_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m38_MA0575_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m193_MA1171_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m675_UN0029_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m436_MA1393_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m450_MA1394_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m587_MA2027_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m191_MA1169_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m194_MA1172_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m201_MA1180_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_16/cluster_6_node_16_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m11_MA0123_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m445_MA0992_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m104_MA0993_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m532_MA1795_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m540_MA1804_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m432_MA1245_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m444_MA1005_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m106_MA0998_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m717_UN0357_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m251_MA1242_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m417_MA1671_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m552_MA1817_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m438_MA0976_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m656_MA1001_3_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m554_MA1819_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m555_MA1820_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m553_MA1818_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m556_MA1821_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m567_MA1832_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m108_MA1006_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m700_UN0064_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m94_MA0979_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m134_MA1034_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m683_UN0040_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m688_UN0046_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m148_MA1049_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m107_MA1004_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m31_MA0567_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m105_MA0997_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m91_MA0975_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m150_MA1051_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m151_MA1053_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_64/cluster_3_node_64_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_3/cluster_7_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_3/cluster_7_node_3_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_2/cluster_7_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_2/cluster_7_node_2_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_1/cluster_7_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_1/cluster_7_node_1_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_16/cluster_6_node_16_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_16/cluster_6_node_16_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_64/cluster_3_node_64_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_64/cluster_3_node_64_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_3/cluster_7_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194939_Bz3SfV


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_2/cluster_7_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194939_4REVR0


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_1/cluster_7_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194939_QNjeP6


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_16/cluster_6_nb_motifs_9.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194939_e50YQG


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_64/cluster_3_nb_motifs_32.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194939_aOtJP9


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_3/cluster_7_node_3_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m192_MA1170_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m198_MA1176_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m646_MA1392_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_17/cluster_6_node_17_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m694_UN0054_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m5_MA0054_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m197_MA1175_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m202_MA1181_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_18/cluster_6_node_18_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_1/cluster_7_node_1_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_2/cluster_7_node_2_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_16/cluster_6_node_16_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_18/cluster_6_node_18_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_18/cluster_6_node_18_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_17/cluster_6_node_17_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_17/cluster_6_node_17_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_64/cluster_3_node_64_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_17/cluster_6_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194940_OtzCp1


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_18/cluster_6_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194940_fmt16j


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_17/cluster_6_node_17_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_18/cluster_6_node_18_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m753_UN0421_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m768_UN0689_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_4/cluster_7_node_4_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_4/cluster_7_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_4/cluster_7_node_4_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_4/cluster_7_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194942_l1iw6T


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m3_MA0034_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m662_UN0008_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_20/cluster_6_node_20_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_4/cluster_7_node_4_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m200_MA1179_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m414_MA1662_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m449_MA1391_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m195_MA1173_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m199_MA1177_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m196_MA1174_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m631_MA1178_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_19/cluster_6_node_19_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m694_UN0054_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m5_MA0054_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m197_MA1175_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m202_MA1181_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m200_MA1179_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m414_MA1662_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m449_MA1391_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m195_MA1173_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m199_MA1177_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m196_MA1174_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m631_MA1178_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_21/cluster_6_node_21_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_20/cluster_6_node_20_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_20/cluster_6_node_20_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_21/cluster_6_node_21_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_21/cluster_6_node_21_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_20/cluster_6_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194943_e7uoEA


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_19/cluster_6_nb_motifs_7.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194943_CruTn1


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_21/cluster_6_nb_motifs_11.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194943_UfEXHC


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_20/cluster_6_node_20_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_19/cluster_6_node_19_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_21/cluster_6_node_21_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m38_MA0575_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m193_MA1171_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m675_UN0029_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m436_MA1393_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m450_MA1394_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m587_MA2027_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m191_MA1169_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m194_MA1172_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m201_MA1180_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m694_UN0054_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m5_MA0054_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m197_MA1175_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m202_MA1181_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m200_MA1179_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m414_MA1662_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m449_MA1391_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m195_MA1173_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m199_MA1177_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m196_MA1174_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m631_MA1178_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_22/cluster_6_node_22_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_22/cluster_6_node_22_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_22/cluster_6_node_22_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_22/cluster_6_nb_motifs_20.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194946_DodYJS


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m192_MA1170_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m198_MA1176_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m646_MA1392_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m38_MA0575_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m193_MA1171_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m675_UN0029_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m436_MA1393_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m450_MA1394_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m587_MA2027_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m191_MA1169_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m194_MA1172_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m201_MA1180_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m694_UN0054_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m5_MA0054_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m197_MA1175_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m202_MA1181_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m200_MA1179_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m414_MA1662_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m449_MA1391_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m195_MA1173_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m199_MA1177_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m196_MA1174_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m631_MA1178_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_23/cluster_6_node_23_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m3_MA0034_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m662_UN0008_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m192_MA1170_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m198_MA1176_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m646_MA1392_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m38_MA0575_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m193_MA1171_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m675_UN0029_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m436_MA1393_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m450_MA1394_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m587_MA2027_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m191_MA1169_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m194_MA1172_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m201_MA1180_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m694_UN0054_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m5_MA0054_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m197_MA1175_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m202_MA1181_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m200_MA1179_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m414_MA1662_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m449_MA1391_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m195_MA1173_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m199_MA1177_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m196_MA1174_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m631_MA1178_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_24/cluster_6_node_24_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_22/cluster_6_node_22_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m670_UN0021_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m11_MA0123_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m445_MA0992_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m104_MA0993_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m532_MA1795_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m540_MA1804_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m432_MA1245_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m444_MA1005_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m106_MA0998_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m717_UN0357_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m251_MA1242_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m417_MA1671_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m552_MA1817_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m438_MA0976_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m656_MA1001_3_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m554_MA1819_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m555_MA1820_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m553_MA1818_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m556_MA1821_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m567_MA1832_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m108_MA1006_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m700_UN0064_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m94_MA0979_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m134_MA1034_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m683_UN0040_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m688_UN0046_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m148_MA1049_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m107_MA1004_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m31_MA0567_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m105_MA0997_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m91_MA0975_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m150_MA1051_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m151_MA1053_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_65/cluster_3_node_65_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_23/cluster_6_node_23_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_23/cluster_6_node_23_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_24/cluster_6_node_24_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_24/cluster_6_node_24_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_65/cluster_3_node_65_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_65/cluster_3_node_65_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_23/cluster_6_nb_motifs_23.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194947_mMVdoo


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_24/cluster_6_nb_motifs_25.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194947_8NF87v


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_65/cluster_3_nb_motifs_33.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194947_AE0FqV


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m577_MA2017_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m566_MA1831_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m714_UN0353_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m670_UN0021_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m11_MA0123_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m445_MA0992_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m104_MA0993_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m532_MA1795_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m540_MA1804_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m432_MA1245_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m444_MA1005_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m106_MA0998_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m717_UN0357_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m251_MA1242_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m417_MA1671_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m552_MA1817_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m438_MA0976_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m656_MA1001_3_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m554_MA1819_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m555_MA1820_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m553_MA1818_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m556_MA1821_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m567_MA1832_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m108_MA1006_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m700_UN0064_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m94_MA0979_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m134_MA1034_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m683_UN0040_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m688_UN0046_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m148_MA1049_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m107_MA1004_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m31_MA0567_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m105_MA0997_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m91_MA0975_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m150_MA1051_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m151_MA1053_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_66/cluster_3_node_66_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_23/cluster_6_node_23_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_6/merged_consensuses/node_24/cluster_6_node_24_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_65/cluster_3_node_65_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_66/cluster_3_node_66_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_66/cluster_3_node_66_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_66/cluster_3_nb_motifs_36.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194948_EXGwkm


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m327_MA1331_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m328_MA1332_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_5/cluster_7_node_5_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_5/cluster_7_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_5/cluster_7_node_5_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_66/cluster_3_node_66_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_5/cluster_7_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194949_4IJcBF


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m641_MA1351_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m769_UN0690_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_6/cluster_7_node_6_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_5/cluster_7_node_5_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_6/cluster_7_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_6/cluster_7_node_6_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_6/cluster_7_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194950_HHD50V


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_6/cluster_7_node_6_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m79_MA0959_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m83_MA0963_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_7/cluster_7_node_7_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_7/cluster_7_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_7/cluster_7_node_7_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_7/cluster_7_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194952_BcTWpi


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m163_MA1074_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m664_UN0011_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_8/cluster_7_node_8_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_7/cluster_7_node_7_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_8/cluster_7_node_8_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_8/cluster_7_node_8_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_8/cluster_7_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194953_dfNgXB


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m204_MA1183_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m211_MA1190_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_8/merged_consensuses/node_1/cluster_8_node_1_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m206_MA1185_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m208_MA1187_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_8/merged_consensuses/node_2/cluster_8_node_2_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m205_MA1184_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m212_MA1191_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_8/merged_consensuses/node_3/cluster_8_node_3_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_8/cluster_7_node_8_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_8/merged_consensuses/node_1/cluster_8_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_8 -name cluster_8 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_8/merged_consensuses/node_1/cluster_8_node_1_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_8/merged_consensuses/node_3/cluster_8_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_8 -name cluster_8 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_8/merged_consensuses/node_3/cluster_8_node_3_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_8/merged_consensuses/node_2/cluster_8_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_8 -name cluster_8 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_8/merged_consensuses/node_2/cluster_8_node_2_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_8/merged_consensuses/node_2/cluster_8_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194954_NbioGp


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_8/merged_consensuses/node_3/cluster_8_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194954_6gY1Oa


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_8/merged_consensuses/node_1/cluster_8_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194954_G9fpzl


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m123_MA1021_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m666_UN0015_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_9/cluster_7_node_9_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m329_MA1333_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m327_MA1331_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m328_MA1332_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_10/cluster_7_node_10_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_8/merged_consensuses/node_2/cluster_8_node_2_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_8/merged_consensuses/node_3/cluster_8_node_3_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_8/merged_consensuses/node_1/cluster_8_node_1_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_9/cluster_7_node_9_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_9/cluster_7_node_9_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_10/cluster_7_node_10_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_10/cluster_7_node_10_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_9/cluster_7_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194955_sjn8MD


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_10/cluster_7_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194955_FiIEma


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m680_UN0037_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m686_UN0043_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_11/cluster_7_node_11_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_9/cluster_7_node_9_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_10/cluster_7_node_10_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_11/cluster_7_node_11_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_11/cluster_7_node_11_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_11/cluster_7_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194956_FokKCN


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m203_MA1182_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m204_MA1183_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m211_MA1190_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_8/merged_consensuses/node_4/cluster_8_node_4_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m206_MA1185_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m208_MA1187_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m203_MA1182_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m204_MA1183_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m211_MA1190_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_8/merged_consensuses/node_5/cluster_8_node_5_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m381_MA1401_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m205_MA1184_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m212_MA1191_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_8/merged_consensuses/node_6/cluster_8_node_6_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_11/cluster_7_node_11_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_8/merged_consensuses/node_4/cluster_8_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_8 -name cluster_8 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_8/merged_consensuses/node_4/cluster_8_node_4_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_8/merged_consensuses/node_6/cluster_8_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_8 -name cluster_8 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_8/merged_consensuses/node_6/cluster_8_node_6_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_8/merged_consensuses/node_5/cluster_8_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_8 -name cluster_8 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_8/merged_consensuses/node_5/cluster_8_node_5_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_8/merged_consensuses/node_4/cluster_8_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194957_hzOxpS


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_8/merged_consensuses/node_6/cluster_8_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194957_eKWTxG


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_8/merged_consensuses/node_5/cluster_8_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194957_sUvDpC


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m30_MA0566_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m77_MA0957_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m78_MA0958_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_12/cluster_7_node_12_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m754_UN0422_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m543_MA1808_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m546_MA1811_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m641_MA1351_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m769_UN0690_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_13/cluster_7_node_13_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_8/merged_consensuses/node_4/cluster_8_node_4_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_8/merged_consensuses/node_6/cluster_8_node_6_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_8/merged_consensuses/node_5/cluster_8_node_5_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_12/cluster_7_node_12_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_12/cluster_7_node_12_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_13/cluster_7_node_13_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_13/cluster_7_node_13_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_12/cluster_7_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194958_IjpXZq


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_13/cluster_7_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194958_4w2AI4


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m163_MA1074_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m664_UN0011_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m123_MA1021_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m666_UN0015_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_14/cluster_7_node_14_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_12/cluster_7_node_12_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_13/cluster_7_node_13_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_14/cluster_7_node_14_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_14/cluster_7_node_14_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_14/cluster_7_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.194959_sDBjBF


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m206_MA1185_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m208_MA1187_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m203_MA1182_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m204_MA1183_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m211_MA1190_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m381_MA1401_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m205_MA1184_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m212_MA1191_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_8/merged_consensuses/node_7/cluster_8_node_7_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m89_MA0972_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m206_MA1185_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m208_MA1187_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m203_MA1182_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m204_MA1183_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m211_MA1190_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m381_MA1401_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m205_MA1184_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m212_MA1191_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_8/merged_consensuses/node_8/cluster_8_node_8_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_14/cluster_7_node_14_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_8/merged_consensuses/node_7/cluster_8_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_8 -name cluster_8 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_8/merged_consensuses/node_7/cluster_8_node_7_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_8/merged_consensuses/node_8/cluster_8_node_8_cat.tf -v 0 -in_format tf -out_format tf -id cluster_8 -name cluster_8 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_8/merged_consensuses/node_8/cluster_8_node_8_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_8/merged_consensuses/node_7/cluster_8_nb_motifs_8.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195000_aa5F9D


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_8/merged_consensuses/node_8/cluster_8_nb_motifs_9.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195000_foF6v4


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m101_MA0988_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m76_MA0956_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_15/cluster_7_node_15_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_8/merged_consensuses/node_7/cluster_8_node_7_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_8/merged_consensuses/node_8/cluster_8_node_8_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_15/cluster_7_node_15_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_15/cluster_7_node_15_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_15/cluster_7_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195001_44z4Yf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m84_MA0966_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m101_MA0988_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m76_MA0956_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_16/cluster_7_node_16_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_15/cluster_7_node_15_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_16/cluster_7_node_16_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_16/cluster_7_node_16_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_16/cluster_7_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195002_7tehZw


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_16/cluster_7_node_16_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m303_MA1301_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m310_MA1309_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_1/cluster_9_node_1_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m307_MA1305_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m715_UN0354_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_2/cluster_9_node_2_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m309_MA1308_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m314_MA1314_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_3/cluster_9_node_3_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m350_MA1357_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m351_MA1358_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_17/cluster_7_node_17_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_3/cluster_9_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_3/cluster_9_node_3_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_1/cluster_9_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_1/cluster_9_node_1_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_2/cluster_9_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_2/cluster_9_node_2_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_17/cluster_7_node_17_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_17/cluster_7_node_17_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_3/cluster_9_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195004_1YGIxq


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_1/cluster_9_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195004_XkNM4Z


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_2/cluster_9_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195004_2GpCJQ


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_17/cluster_7_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195004_zvC85M


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m33_MA0569_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m30_MA0566_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m77_MA0957_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m78_MA0958_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_18/cluster_7_node_18_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_3/cluster_9_node_3_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_1/cluster_9_node_1_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_18/cluster_7_node_18_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_18/cluster_7_node_18_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_2/cluster_9_node_2_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_17/cluster_7_node_17_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_18/cluster_7_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195005_6koK24


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_18/cluster_7_node_18_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m305_MA1303_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m318_MA1318_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_4/cluster_9_node_4_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m164_MA1075_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m168_MA1084_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_5/cluster_9_node_5_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m479_MA1740_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m680_UN0037_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m686_UN0043_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_19/cluster_7_node_19_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_5/cluster_9_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_5/cluster_9_node_5_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_4/cluster_9_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_4/cluster_9_node_4_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_19/cluster_7_node_19_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_19/cluster_7_node_19_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_5/cluster_9_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195007_tmx3Kf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_4/cluster_9_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195007_svpVyO


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_19/cluster_7_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195007_Duehno


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m308_MA1306_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m313_MA1313_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_6/cluster_9_node_6_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_5/cluster_9_node_5_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_4/cluster_9_node_4_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m659_UN0003_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m669_UN0019_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_20/cluster_7_node_20_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_19/cluster_7_node_19_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m244_MA1232_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m256_MA1248_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m493_MA1754_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m247_MA1236_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m254_MA1246_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m253_MA1244_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m261_MA1256_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m262_MA1257_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m240_MA1226_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m266_MA1261_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m241_MA1228_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m248_MA1239_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m249_MA1240_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m267_MA1262_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m619_MA0994_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m386_MA1000_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m573_MA2013_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m568_MA1833_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m582_MA2022_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m635_MA1231_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m270_MA1266_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m492_MA1753_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m237_MA1222_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m257_MA1250_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m269_MA1264_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m239_MA1225_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m236_MA1221_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m255_MA1247_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m259_MA1252_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_67/cluster_3_node_67_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_6/cluster_9_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_6/cluster_9_node_6_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_20/cluster_7_node_20_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_20/cluster_7_node_20_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_67/cluster_3_node_67_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_67/cluster_3_node_67_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_6/cluster_9_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195008_Mgpsjj


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_20/cluster_7_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195008_Ni6cB2


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_67/cluster_3_nb_motifs_29.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195008_BDDEfZ


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_6/cluster_9_node_6_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_20/cluster_7_node_20_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_67/cluster_3_node_67_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m300_MA1298_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m316_MA1316_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_7/cluster_9_node_7_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m301_MA1299_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m308_MA1306_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m313_MA1313_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_8/cluster_9_node_8_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m615_MA0930_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m752_UN0420_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_21/cluster_7_node_21_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_7/cluster_9_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_7/cluster_9_node_7_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_8/cluster_9_node_8_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_8/cluster_9_node_8_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_21/cluster_7_node_21_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_21/cluster_7_node_21_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_7/cluster_9_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195010_wVA5AU


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_8/cluster_9_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195010_IuztZz


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_21/cluster_7_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195010_GG2Hqs


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m309_MA1308_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m314_MA1314_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m305_MA1303_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m318_MA1318_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_9/cluster_9_node_9_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m642_MA1359_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m643_MA1360_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_22/cluster_7_node_22_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_7/cluster_9_node_7_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_8/cluster_9_node_8_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_21/cluster_7_node_21_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_9/cluster_9_node_9_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_9/cluster_9_node_9_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_22/cluster_7_node_22_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_22/cluster_7_node_22_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_9/cluster_9_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195011_eDupa5


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_22/cluster_7_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195011_f8VQ5p


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_9/cluster_9_node_9_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_22/cluster_7_node_22_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m303_MA1301_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m310_MA1309_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m300_MA1298_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m316_MA1316_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_10/cluster_9_node_10_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m455_MA1076_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m625_MA1081_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_11/cluster_9_node_11_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_11/cluster_9_node_11_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_11/cluster_9_node_11_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_10/cluster_9_node_10_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_10/cluster_9_node_10_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_10/cluster_9_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195013_3xzSsl


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_11/cluster_9_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195013_41tuM8


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m299_MA1297_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m309_MA1308_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m314_MA1314_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m305_MA1303_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m318_MA1318_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_12/cluster_9_node_12_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m53_MA0931_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m699_UN0063_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_24/cluster_7_node_24_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m672_UN0025_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m163_MA1074_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m664_UN0011_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m123_MA1021_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m666_UN0015_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_23/cluster_7_node_23_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_10/cluster_9_node_10_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_11/cluster_9_node_11_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_12/cluster_9_node_12_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_12/cluster_9_node_12_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_23/cluster_7_node_23_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_23/cluster_7_node_23_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_24/cluster_7_node_24_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_24/cluster_7_node_24_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_23/cluster_7_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195014_CyTWsB


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_24/cluster_7_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195014_sVQ0jS


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_12/cluster_9_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195014_pQkL8h


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m659_UN0003_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m669_UN0019_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m672_UN0025_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m163_MA1074_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m664_UN0011_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m123_MA1021_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m666_UN0015_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_25/cluster_7_node_25_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_23/cluster_7_node_23_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_24/cluster_7_node_24_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_12/cluster_9_node_12_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m577_MA2017_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m566_MA1831_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m714_UN0353_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m670_UN0021_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m11_MA0123_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m445_MA0992_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m104_MA0993_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m532_MA1795_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m540_MA1804_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m432_MA1245_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m444_MA1005_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m106_MA0998_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m717_UN0357_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m251_MA1242_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m417_MA1671_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m552_MA1817_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m438_MA0976_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m656_MA1001_3_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m554_MA1819_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m555_MA1820_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m553_MA1818_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m556_MA1821_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m567_MA1832_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m108_MA1006_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m700_UN0064_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m94_MA0979_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m134_MA1034_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m683_UN0040_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m688_UN0046_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m148_MA1049_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m107_MA1004_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m31_MA0567_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m105_MA0997_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m91_MA0975_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m150_MA1051_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m151_MA1053_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m244_MA1232_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m256_MA1248_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m493_MA1754_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m247_MA1236_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m254_MA1246_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m253_MA1244_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m261_MA1256_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m262_MA1257_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m240_MA1226_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m266_MA1261_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m241_MA1228_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m248_MA1239_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m249_MA1240_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m267_MA1262_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m619_MA0994_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m386_MA1000_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m573_MA2013_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m568_MA1833_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m582_MA2022_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m635_MA1231_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m270_MA1266_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m492_MA1753_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m237_MA1222_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m257_MA1250_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m269_MA1264_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m239_MA1225_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m236_MA1221_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m255_MA1247_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m259_MA1252_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_68/cluster_3_node_68_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_25/cluster_7_node_25_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_25/cluster_7_node_25_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_68/cluster_3_node_68_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_68/cluster_3_node_68_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_25/cluster_7_nb_motifs_7.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195015_Un9OF5


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_68/cluster_3_nb_motifs_65.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195015_SChOZj


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m175_MA1093_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m702_UN0068_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_13/cluster_9_node_13_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m166_MA1078_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m174_MA1092_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_14/cluster_9_node_14_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_25/cluster_7_node_25_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_14/cluster_9_node_14_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_14/cluster_9_node_14_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_13/cluster_9_node_13_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_13/cluster_9_node_13_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_68/cluster_3_node_68_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_14/cluster_9_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195016_jctqe5


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_13/cluster_9_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195016_VzeqKv


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m304_MA1302_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m303_MA1301_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m310_MA1309_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m300_MA1298_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m316_MA1316_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_15/cluster_9_node_15_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m32_MA0568_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m33_MA0569_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m30_MA0566_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m77_MA0957_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m78_MA0958_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_26/cluster_7_node_26_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m113_MA1011_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m84_MA0966_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m101_MA0988_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m76_MA0956_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_27/cluster_7_node_27_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_13/cluster_9_node_13_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_14/cluster_9_node_14_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_15/cluster_9_node_15_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_15/cluster_9_node_15_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_26/cluster_7_node_26_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_26/cluster_7_node_26_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_27/cluster_7_node_27_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_27/cluster_7_node_27_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_15/cluster_9_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195017_Pxicv0


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_26/cluster_7_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195017_irvmqU


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_27/cluster_7_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195017_RYcgtE


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_15/cluster_9_node_15_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_26/cluster_7_node_26_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_27/cluster_7_node_27_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m758_UN0427_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m577_MA2017_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m566_MA1831_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m714_UN0353_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m670_UN0021_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m11_MA0123_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m445_MA0992_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m104_MA0993_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m532_MA1795_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m540_MA1804_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m432_MA1245_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m444_MA1005_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m106_MA0998_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m717_UN0357_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m251_MA1242_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m417_MA1671_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m552_MA1817_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m438_MA0976_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m656_MA1001_3_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m554_MA1819_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m555_MA1820_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m553_MA1818_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m556_MA1821_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m567_MA1832_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m108_MA1006_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m700_UN0064_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m94_MA0979_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m134_MA1034_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m683_UN0040_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m688_UN0046_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m148_MA1049_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m107_MA1004_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m31_MA0567_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m105_MA0997_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m91_MA0975_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m150_MA1051_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m151_MA1053_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m244_MA1232_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m256_MA1248_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m493_MA1754_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m247_MA1236_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m254_MA1246_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m253_MA1244_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m261_MA1256_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m262_MA1257_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m240_MA1226_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m266_MA1261_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m241_MA1228_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m248_MA1239_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m249_MA1240_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m267_MA1262_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m619_MA0994_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m386_MA1000_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m573_MA2013_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m568_MA1833_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m582_MA2022_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m635_MA1231_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m270_MA1266_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m492_MA1753_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m237_MA1222_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m257_MA1250_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m269_MA1264_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m239_MA1225_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m236_MA1221_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m255_MA1247_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m259_MA1252_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_69/cluster_3_node_69_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_69/cluster_3_node_69_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_69/cluster_3_node_69_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_69/cluster_3_nb_motifs_66.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195018_tiVjT3


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m175_MA1093_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m702_UN0068_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m166_MA1078_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m174_MA1092_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_16/cluster_9_node_16_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m165_MA1077_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m171_MA1089_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_17/cluster_9_node_17_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m397_MA1411_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m398_MA1412_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_28/cluster_7_node_28_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_16/cluster_9_node_16_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_16/cluster_9_node_16_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_17/cluster_9_node_17_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_17/cluster_9_node_17_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_28/cluster_7_node_28_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_28/cluster_7_node_28_matrices.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_69/cluster_3_node_69_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_16/cluster_9_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195019_ZN67iQ


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_28/cluster_7_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195019_B6M7SC


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_17/cluster_9_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195019_ASGBoI


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m298_MA1296_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m304_MA1302_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m303_MA1301_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m310_MA1309_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m300_MA1298_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m316_MA1316_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_18/cluster_9_node_18_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m684_UN0041_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m753_UN0421_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m768_UN0689_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_30/cluster_7_node_30_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m82_MA0962_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m659_UN0003_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m669_UN0019_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m672_UN0025_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m163_MA1074_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m664_UN0011_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m123_MA1021_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m666_UN0015_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_29/cluster_7_node_29_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_16/cluster_9_node_16_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_28/cluster_7_node_28_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_17/cluster_9_node_17_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m419_MA1673_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m745_UN0412_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m725_UN0391_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m599_MA2039_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m600_MA2040_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m758_UN0427_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m577_MA2017_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m566_MA1831_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m714_UN0353_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m670_UN0021_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m11_MA0123_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m445_MA0992_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m104_MA0993_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m532_MA1795_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m540_MA1804_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m432_MA1245_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m444_MA1005_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m106_MA0998_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m717_UN0357_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m251_MA1242_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m417_MA1671_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m552_MA1817_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m438_MA0976_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m656_MA1001_3_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m554_MA1819_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m555_MA1820_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m553_MA1818_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m556_MA1821_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m567_MA1832_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m108_MA1006_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m700_UN0064_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m94_MA0979_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m134_MA1034_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m683_UN0040_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m688_UN0046_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m148_MA1049_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m107_MA1004_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m31_MA0567_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m105_MA0997_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m91_MA0975_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m150_MA1051_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m151_MA1053_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m244_MA1232_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m256_MA1248_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m493_MA1754_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m247_MA1236_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m254_MA1246_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m253_MA1244_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m261_MA1256_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m262_MA1257_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m240_MA1226_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m266_MA1261_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m241_MA1228_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m248_MA1239_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m249_MA1240_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m267_MA1262_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m619_MA0994_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m386_MA1000_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m573_MA2013_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m568_MA1833_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m582_MA2022_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m635_MA1231_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m270_MA1266_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m492_MA1753_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m237_MA1222_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m257_MA1250_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m269_MA1264_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m239_MA1225_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m236_MA1221_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m255_MA1247_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m259_MA1252_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_70/cluster_3_node_70_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_18/cluster_9_node_18_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_18/cluster_9_node_18_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_30/cluster_7_node_30_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_30/cluster_7_node_30_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_29/cluster_7_node_29_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_29/cluster_7_node_29_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_70/cluster_3_node_70_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_70/cluster_3_node_70_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_18/cluster_9_nb_motifs_6.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195020_juHxdX


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_29/cluster_7_nb_motifs_8.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195020_q1Ur8e


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_30/cluster_7_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195020_cdPVwk


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_70/cluster_3_nb_motifs_71.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195020_3FMU12


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_29/cluster_7_node_29_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_18/cluster_9_node_18_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_30/cluster_7_node_30_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_3/merged_consensuses/node_70/cluster_3_node_70_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m167_MA1080_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m164_MA1075_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m168_MA1084_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_20/cluster_9_node_20_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m173_MA1091_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m175_MA1093_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m702_UN0068_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m166_MA1078_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m174_MA1092_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_19/cluster_9_node_19_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_20/cluster_9_node_20_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_20/cluster_9_node_20_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_19/cluster_9_node_19_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_19/cluster_9_node_19_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_20/cluster_9_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195022_Ekfxzn


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_19/cluster_9_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195022_A7kdsh


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m170_MA1088_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m165_MA1077_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m171_MA1089_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_21/cluster_9_node_21_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_19/cluster_9_node_19_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_20/cluster_9_node_20_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_21/cluster_9_node_21_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_21/cluster_9_node_21_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_21/cluster_9_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195023_qsMvSA


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m15_MA0549_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m329_MA1333_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m327_MA1331_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m328_MA1332_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_31/cluster_7_node_31_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_21/cluster_9_node_21_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_31/cluster_7_node_31_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_31/cluster_7_node_31_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_31/cluster_7_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195024_psEJ5A


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m297_MA1295_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m299_MA1297_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m309_MA1308_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m314_MA1314_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m305_MA1303_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m318_MA1318_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_22/cluster_9_node_22_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_31/cluster_7_node_31_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_22/cluster_9_node_22_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_22/cluster_9_node_22_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_22/cluster_9_nb_motifs_6.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195025_knY82x


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m172_MA1090_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m456_MA1311_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_23/cluster_9_node_23_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m627_MA1087_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m628_MA1094_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_24/cluster_9_node_24_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_22/cluster_9_node_22_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_23/cluster_9_node_23_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_23/cluster_9_node_23_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_24/cluster_9_node_24_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_24/cluster_9_node_24_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_23/cluster_9_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195026_Qok2sl


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_24/cluster_9_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195026_kvMZU6


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m479_MA1740_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m680_UN0037_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m686_UN0043_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m113_MA1011_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m84_MA0966_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m101_MA0988_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m76_MA0956_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_32/cluster_7_node_32_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m79_MA0959_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m83_MA0963_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m32_MA0568_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m33_MA0569_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m30_MA0566_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m77_MA0957_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m78_MA0958_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_33/cluster_7_node_33_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_24/cluster_9_node_24_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_23/cluster_9_node_23_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_33/cluster_7_node_33_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_33/cluster_7_node_33_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_32/cluster_7_node_32_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_32/cluster_7_node_32_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_33/cluster_7_nb_motifs_7.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195027_qFfaNR


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_32/cluster_7_nb_motifs_7.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195027_ev5ZYi


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m301_MA1299_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m308_MA1306_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m313_MA1313_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m297_MA1295_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m299_MA1297_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m309_MA1308_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m314_MA1314_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m305_MA1303_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m318_MA1318_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_25/cluster_9_node_25_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_33/cluster_7_node_33_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_32/cluster_7_node_32_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_25/cluster_9_node_25_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_25/cluster_9_node_25_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_25/cluster_9_nb_motifs_9.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195028_sEHqJQ


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m306_MA1304_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m317_MA1317_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_27/cluster_9_node_27_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m401_MA1085_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m170_MA1088_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m165_MA1077_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m171_MA1089_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_26/cluster_9_node_26_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_25/cluster_9_node_25_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_27/cluster_9_node_27_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_27/cluster_9_node_27_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_26/cluster_9_node_26_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_26/cluster_9_node_26_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_27/cluster_9_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195029_wtWJWu


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_26/cluster_9_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195029_gge5aj


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m157_MA1061_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m691_UN0049_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_34/cluster_7_node_34_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_27/cluster_9_node_27_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_26/cluster_9_node_26_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_34/cluster_7_node_34_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_34/cluster_7_node_34_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_34/cluster_7_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195030_XGER7n


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m307_MA1305_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m715_UN0354_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m301_MA1299_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m308_MA1306_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m313_MA1313_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m297_MA1295_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m299_MA1297_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m309_MA1308_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m314_MA1314_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m305_MA1303_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m318_MA1318_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_28/cluster_9_node_28_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m53_MA0931_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m699_UN0063_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m684_UN0041_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m753_UN0421_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m768_UN0689_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_35/cluster_7_node_35_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_34/cluster_7_node_34_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_28/cluster_9_node_28_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_28/cluster_9_node_28_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_35/cluster_7_node_35_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_35/cluster_7_node_35_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_35/cluster_7_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195031_g34pKf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_28/cluster_9_nb_motifs_11.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195031_qGypO6


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m169_MA1086_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m541_MA1805_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_30/cluster_9_node_30_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m315_MA1315_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m627_MA1087_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m628_MA1094_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_29/cluster_9_node_29_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_35/cluster_7_node_35_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_28/cluster_9_node_28_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_29/cluster_9_node_29_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_29/cluster_9_node_29_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_30/cluster_9_node_30_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_30/cluster_9_node_30_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_29/cluster_9_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195032_Lhibne


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_30/cluster_9_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195032_2kCQGv


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m127_MA1025_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m685_UN0042_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_36/cluster_7_node_36_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_30/cluster_9_node_30_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_29/cluster_9_node_29_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_36/cluster_7_node_36_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_36/cluster_7_node_36_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_36/cluster_7_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195033_aVRCxZ


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_36/cluster_7_node_36_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m663_UN0010_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m401_MA1085_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m170_MA1088_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m165_MA1077_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m171_MA1089_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_31/cluster_9_node_31_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m172_MA1090_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m456_MA1311_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m169_MA1086_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m541_MA1805_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_33/cluster_9_node_33_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m298_MA1296_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m304_MA1302_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m303_MA1301_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m310_MA1309_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m300_MA1298_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m316_MA1316_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m306_MA1304_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m317_MA1317_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_32/cluster_9_node_32_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_31/cluster_9_node_31_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_31/cluster_9_node_31_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_33/cluster_9_node_33_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_33/cluster_9_node_33_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_32/cluster_9_node_32_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_32/cluster_9_node_32_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_31/cluster_9_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195035_aiEygK


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_33/cluster_9_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195035_2gMy2p


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_32/cluster_9_nb_motifs_8.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195035_1kSVIU


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m82_MA0962_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m659_UN0003_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m669_UN0019_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m672_UN0025_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m163_MA1074_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m664_UN0011_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m123_MA1021_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m666_UN0015_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m79_MA0959_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m83_MA0963_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m32_MA0568_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m33_MA0569_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m30_MA0566_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m77_MA0957_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m78_MA0958_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_37/cluster_7_node_37_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_31/cluster_9_node_31_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_33/cluster_9_node_33_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_32/cluster_9_node_32_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_37/cluster_7_node_37_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_37/cluster_7_node_37_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_37/cluster_7_nb_motifs_15.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195036_pQKIL5


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_37/cluster_7_node_37_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m551_MA1816_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m617_MA0964_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_38/cluster_7_node_38_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m455_MA1076_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m625_MA1081_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m315_MA1315_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m627_MA1087_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m628_MA1094_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_34/cluster_9_node_34_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_38/cluster_7_node_38_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_38/cluster_7_node_38_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_34/cluster_9_node_34_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_34/cluster_9_node_34_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_38/cluster_7_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195038_JSfGMc


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_34/cluster_9_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195038_NPui6b


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m312_MA1312_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m626_MA1083_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_35/cluster_9_node_35_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m307_MA1305_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m715_UN0354_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m301_MA1299_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m308_MA1306_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m313_MA1313_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m297_MA1295_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m299_MA1297_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m309_MA1308_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m314_MA1314_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m305_MA1303_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m318_MA1318_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m455_MA1076_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m625_MA1081_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m315_MA1315_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m627_MA1087_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m628_MA1094_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_36/cluster_9_node_36_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_38/cluster_7_node_38_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_34/cluster_9_node_34_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_36/cluster_9_node_36_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_36/cluster_9_node_36_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_35/cluster_9_node_35_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_35/cluster_9_node_35_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_35/cluster_9_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195039_S68sMs


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_36/cluster_9_nb_motifs_16.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195039_778Tn9


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_35/cluster_9_node_35_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_36/cluster_9_node_36_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m16_MA0551_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m640_MA1338_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_39/cluster_7_node_39_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_39/cluster_7_node_39_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_39/cluster_7_node_39_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_39/cluster_7_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195041_aKDrJU


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m624_MA1079_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m637_MA1307_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_37/cluster_9_node_37_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m133_MA1033_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m13_MA0128_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_40/cluster_7_node_40_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m663_UN0010_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m401_MA1085_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m170_MA1088_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m165_MA1077_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m171_MA1089_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m172_MA1090_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m456_MA1311_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m169_MA1086_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m541_MA1805_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_38/cluster_9_node_38_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_39/cluster_7_node_39_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_37/cluster_9_node_37_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_37/cluster_9_node_37_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_38/cluster_9_node_38_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_38/cluster_9_node_38_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_40/cluster_7_node_40_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_40/cluster_7_node_40_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_37/cluster_9_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195042_DKJkux


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_40/cluster_7_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195042_T0CAus


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_38/cluster_9_nb_motifs_9.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195042_ouwUKv


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_37/cluster_9_node_37_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_40/cluster_7_node_40_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_38/cluster_9_node_38_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m397_MA1411_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m398_MA1412_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m479_MA1740_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m680_UN0037_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m686_UN0043_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m113_MA1011_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m84_MA0966_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m101_MA0988_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m76_MA0956_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_41/cluster_7_node_41_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m298_MA1296_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m304_MA1302_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m303_MA1301_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m310_MA1309_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m300_MA1298_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m316_MA1316_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m306_MA1304_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m317_MA1317_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m307_MA1305_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m715_UN0354_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m301_MA1299_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m308_MA1306_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m313_MA1313_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m297_MA1295_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m299_MA1297_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m309_MA1308_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m314_MA1314_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m305_MA1303_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m318_MA1318_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m455_MA1076_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m625_MA1081_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m315_MA1315_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m627_MA1087_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m628_MA1094_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_39/cluster_9_node_39_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_41/cluster_7_node_41_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_41/cluster_7_node_41_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_39/cluster_9_node_39_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_39/cluster_9_node_39_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_41/cluster_7_nb_motifs_9.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195044_maPoU7


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_39/cluster_9_nb_motifs_24.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195044_VTv0UK


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m409_MA0570_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m754_UN0422_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m543_MA1808_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m546_MA1811_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m641_MA1351_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m769_UN0690_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_42/cluster_7_node_42_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m173_MA1091_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m175_MA1093_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m702_UN0068_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m166_MA1078_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m174_MA1092_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m167_MA1080_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m164_MA1075_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m168_MA1084_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_40/cluster_9_node_40_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_41/cluster_7_node_41_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_39/cluster_9_node_39_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_42/cluster_7_node_42_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_42/cluster_7_node_42_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_40/cluster_9_node_40_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_40/cluster_9_node_40_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_42/cluster_7_nb_motifs_6.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195045_8pIa4j


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_40/cluster_9_nb_motifs_8.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195045_htlJOK


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_40/cluster_9_node_40_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_42/cluster_7_node_42_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m663_UN0010_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m401_MA1085_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m170_MA1088_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m165_MA1077_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m171_MA1089_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m172_MA1090_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m456_MA1311_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m169_MA1086_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m541_MA1805_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m173_MA1091_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m175_MA1093_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m702_UN0068_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m166_MA1078_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m174_MA1092_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m167_MA1080_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m164_MA1075_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m168_MA1084_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_41/cluster_9_node_41_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_41/cluster_9_node_41_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_41/cluster_9_node_41_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_41/cluster_9_nb_motifs_17.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195047_qY9mKO


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_41/cluster_9_node_41_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m311_MA1310_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m624_MA1079_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m637_MA1307_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_42/cluster_9_node_42_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_42/cluster_9_node_42_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_42/cluster_9_node_42_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_42/cluster_9_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195049_XMybEI


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m312_MA1312_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m626_MA1083_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m311_MA1310_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m624_MA1079_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m637_MA1307_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_43/cluster_9_node_43_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_42/cluster_9_node_42_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_43/cluster_9_node_43_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_43/cluster_9_node_43_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_43/cluster_9_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195050_D8Jr61


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_43/cluster_9_node_43_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m298_MA1296_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m304_MA1302_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m303_MA1301_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m310_MA1309_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m300_MA1298_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m316_MA1316_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m306_MA1304_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m317_MA1317_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m307_MA1305_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m715_UN0354_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m301_MA1299_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m308_MA1306_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m313_MA1313_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m297_MA1295_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m299_MA1297_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m309_MA1308_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m314_MA1314_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m305_MA1303_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m318_MA1318_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m455_MA1076_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m625_MA1081_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m315_MA1315_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m627_MA1087_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m628_MA1094_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m663_UN0010_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m401_MA1085_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m170_MA1088_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m165_MA1077_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m171_MA1089_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m172_MA1090_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m456_MA1311_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m169_MA1086_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m541_MA1805_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m173_MA1091_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m175_MA1093_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m702_UN0068_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m166_MA1078_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m174_MA1092_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m167_MA1080_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m164_MA1075_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m168_MA1084_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_44/cluster_9_node_44_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_44/cluster_9_node_44_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_44/cluster_9_node_44_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_44/cluster_9_nb_motifs_41.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195052_VsyS66


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m312_MA1312_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m626_MA1083_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m311_MA1310_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m624_MA1079_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m637_MA1307_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m298_MA1296_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m304_MA1302_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m303_MA1301_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m310_MA1309_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m300_MA1298_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m316_MA1316_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m306_MA1304_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m317_MA1317_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m307_MA1305_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m715_UN0354_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m301_MA1299_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m308_MA1306_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m313_MA1313_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m297_MA1295_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m299_MA1297_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m309_MA1308_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m314_MA1314_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m305_MA1303_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m318_MA1318_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m455_MA1076_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m625_MA1081_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m315_MA1315_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m627_MA1087_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m628_MA1094_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m663_UN0010_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m401_MA1085_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m170_MA1088_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m165_MA1077_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m171_MA1089_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m172_MA1090_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m456_MA1311_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m169_MA1086_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m541_MA1805_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m173_MA1091_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m175_MA1093_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m702_UN0068_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m166_MA1078_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m174_MA1092_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m167_MA1080_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m164_MA1075_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m168_MA1084_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_45/cluster_9_node_45_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m302_MA1300_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m312_MA1312_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m626_MA1083_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m311_MA1310_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m624_MA1079_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m637_MA1307_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m298_MA1296_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m304_MA1302_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m303_MA1301_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m310_MA1309_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m300_MA1298_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m316_MA1316_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m306_MA1304_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m317_MA1317_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m307_MA1305_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m715_UN0354_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m301_MA1299_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m308_MA1306_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m313_MA1313_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m297_MA1295_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m299_MA1297_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m309_MA1308_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m314_MA1314_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m305_MA1303_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m318_MA1318_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m455_MA1076_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m625_MA1081_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m315_MA1315_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m627_MA1087_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m628_MA1094_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m663_UN0010_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m401_MA1085_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m170_MA1088_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m165_MA1077_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m171_MA1089_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m172_MA1090_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m456_MA1311_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m169_MA1086_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m541_MA1805_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m173_MA1091_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m175_MA1093_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m702_UN0068_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m166_MA1078_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m174_MA1092_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m167_MA1080_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m164_MA1075_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m168_MA1084_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_46/cluster_9_node_46_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_44/cluster_9_node_44_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_46/cluster_9_node_46_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_46/cluster_9_node_46_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_45/cluster_9_node_45_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_45/cluster_9_node_45_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_46/cluster_9_nb_motifs_47.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195053_fGbR8N


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_45/cluster_9_nb_motifs_46.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195054_rhmWqI


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_46/cluster_9_node_46_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_9/merged_consensuses/node_45/cluster_9_node_45_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m574_MA2014_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m642_MA1359_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m643_MA1360_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_43/cluster_7_node_43_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_43/cluster_7_node_43_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_43/cluster_7_node_43_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_43/cluster_7_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195059_YQXMgN


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_43/cluster_7_node_43_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m80_MA0960_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m397_MA1411_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m398_MA1412_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m479_MA1740_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m680_UN0037_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m686_UN0043_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m113_MA1011_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m84_MA0966_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m101_MA0988_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m76_MA0956_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_44/cluster_7_node_44_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m27_MA0562_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m82_MA0962_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m659_UN0003_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m669_UN0019_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m672_UN0025_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m163_MA1074_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m664_UN0011_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m123_MA1021_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m666_UN0015_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m79_MA0959_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m83_MA0963_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m32_MA0568_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m33_MA0569_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m30_MA0566_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m77_MA0957_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m78_MA0958_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_45/cluster_7_node_45_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_44/cluster_7_node_44_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_44/cluster_7_node_44_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_45/cluster_7_node_45_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_45/cluster_7_node_45_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_44/cluster_7_nb_motifs_10.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195102_p36ePM


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_45/cluster_7_nb_motifs_16.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195102_LoLeQj


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_44/cluster_7_node_44_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_45/cluster_7_node_45_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m227_MA1207_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m352_MA1361_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_46/cluster_7_node_46_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_46/cluster_7_node_46_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_46/cluster_7_node_46_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_46/cluster_7_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195107_v0i6xn


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_46/cluster_7_node_46_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m17_MA0552_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m355_MA1364_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_47/cluster_7_node_47_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_47/cluster_7_node_47_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_47/cluster_7_node_47_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_47/cluster_7_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195110_D7ewTh


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_47/cluster_7_node_47_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m698_UN0061_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m615_MA0930_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m752_UN0420_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_48/cluster_7_node_48_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_48/cluster_7_node_48_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_48/cluster_7_node_48_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_48/cluster_7_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195113_KcUsBY


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_48/cluster_7_node_48_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m618_MA0965_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m16_MA0551_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m640_MA1338_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_49/cluster_7_node_49_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_49/cluster_7_node_49_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_49/cluster_7_node_49_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_49/cluster_7_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195118_Niji9R


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_49/cluster_7_node_49_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m561_MA1826_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m574_MA2014_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m642_MA1359_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m643_MA1360_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_50/cluster_7_node_50_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_50/cluster_7_node_50_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_50/cluster_7_node_50_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_50/cluster_7_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195123_vvjQDl


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m157_MA1061_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m691_UN0049_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m27_MA0562_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m82_MA0962_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m659_UN0003_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m669_UN0019_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m672_UN0025_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m163_MA1074_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m664_UN0011_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m123_MA1021_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m666_UN0015_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m79_MA0959_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m83_MA0963_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m32_MA0568_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m33_MA0569_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m30_MA0566_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m77_MA0957_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m78_MA0958_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_51/cluster_7_node_51_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_50/cluster_7_node_50_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_51/cluster_7_node_51_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_51/cluster_7_node_51_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_51/cluster_7_nb_motifs_18.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195124_GjrEcK


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_51/cluster_7_node_51_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m418_MA1672_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m409_MA0570_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m754_UN0422_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m543_MA1808_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m546_MA1811_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m641_MA1351_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m769_UN0690_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_52/cluster_7_node_52_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_52/cluster_7_node_52_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_52/cluster_7_node_52_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_52/cluster_7_nb_motifs_7.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195126_2u78ST


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_52/cluster_7_node_52_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m25_MA0560_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m53_MA0931_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m699_UN0063_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m684_UN0041_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m753_UN0421_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m768_UN0689_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_53/cluster_7_node_53_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_53/cluster_7_node_53_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_53/cluster_7_node_53_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_53/cluster_7_nb_motifs_6.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195129_OLUUYz


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_53/cluster_7_node_53_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m133_MA1033_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m13_MA0128_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m157_MA1061_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m691_UN0049_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m27_MA0562_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m82_MA0962_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m659_UN0003_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m669_UN0019_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m672_UN0025_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m163_MA1074_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m664_UN0011_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m123_MA1021_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m666_UN0015_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m79_MA0959_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m83_MA0963_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m32_MA0568_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m33_MA0569_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m30_MA0566_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m77_MA0957_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m78_MA0958_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_54/cluster_7_node_54_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_54/cluster_7_node_54_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_54/cluster_7_node_54_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_54/cluster_7_nb_motifs_20.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195136_0DpKVt


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_54/cluster_7_node_54_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m755_UN0423_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m81_MA0961_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_55/cluster_7_node_55_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m15_MA0549_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m329_MA1333_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m327_MA1331_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m328_MA1332_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m80_MA0960_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m397_MA1411_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m398_MA1412_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m479_MA1740_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m680_UN0037_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m686_UN0043_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m113_MA1011_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m84_MA0966_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m101_MA0988_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m76_MA0956_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_56/cluster_7_node_56_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_55/cluster_7_node_55_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_55/cluster_7_node_55_matrices.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_56/cluster_7_node_56_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_56/cluster_7_node_56_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_55/cluster_7_nb_motifs_2.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195141_Bb9ftU


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_56/cluster_7_nb_motifs_14.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195141_6aXiNW


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_55/cluster_7_node_55_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_56/cluster_7_node_56_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m62_MA0941_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m127_MA1025_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m685_UN0042_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_57/cluster_7_node_57_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_57/cluster_7_node_57_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_57/cluster_7_node_57_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_57/cluster_7_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195144_V1gorN


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m353_MA1362_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m17_MA0552_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m355_MA1364_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_58/cluster_7_node_58_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_57/cluster_7_node_57_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_58/cluster_7_node_58_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_58/cluster_7_node_58_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_58/cluster_7_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195145_GhCYzU


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_58/cluster_7_node_58_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m698_UN0061_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m615_MA0930_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m752_UN0420_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m418_MA1672_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m409_MA0570_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m754_UN0422_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m543_MA1808_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m546_MA1811_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m641_MA1351_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m769_UN0690_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_59/cluster_7_node_59_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_59/cluster_7_node_59_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_59/cluster_7_node_59_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_59/cluster_7_nb_motifs_10.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195147_4lkmVl


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m478_MA1739_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m350_MA1357_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m351_MA1358_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_60/cluster_7_node_60_cat.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_59/cluster_7_node_59_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_60/cluster_7_node_60_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_60/cluster_7_node_60_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_60/cluster_7_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195148_9ZYsjY


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_60/cluster_7_node_60_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m551_MA1816_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m617_MA0964_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m561_MA1826_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m574_MA2014_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m642_MA1359_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m643_MA1360_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_61/cluster_7_node_61_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_61/cluster_7_node_61_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_61/cluster_7_node_61_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_61/cluster_7_nb_motifs_6.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195151_fv5ofN


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_61/cluster_7_node_61_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m26_MA0561_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m133_MA1033_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m13_MA0128_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m157_MA1061_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m691_UN0049_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m27_MA0562_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m82_MA0962_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m659_UN0003_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m669_UN0019_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m672_UN0025_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m163_MA1074_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m664_UN0011_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m123_MA1021_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m666_UN0015_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m79_MA0959_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m83_MA0963_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m32_MA0568_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m33_MA0569_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m30_MA0566_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m77_MA0957_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m78_MA0958_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_62/cluster_7_node_62_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_62/cluster_7_node_62_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_62/cluster_7_node_62_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_62/cluster_7_nb_motifs_21.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195156_eBcQjz


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_62/cluster_7_node_62_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m62_MA0941_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m127_MA1025_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m685_UN0042_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m551_MA1816_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m617_MA0964_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m561_MA1826_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m574_MA2014_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m642_MA1359_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m643_MA1360_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_63/cluster_7_node_63_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_63/cluster_7_node_63_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_63/cluster_7_node_63_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_63/cluster_7_nb_motifs_9.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195201_Pes2Rd


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_63/cluster_7_node_63_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m15_MA0549_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m329_MA1333_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m327_MA1331_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m328_MA1332_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m80_MA0960_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m397_MA1411_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m398_MA1412_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m479_MA1740_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m680_UN0037_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m686_UN0043_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m113_MA1011_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m84_MA0966_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m101_MA0988_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m76_MA0956_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m26_MA0561_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m133_MA1033_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m13_MA0128_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m157_MA1061_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m691_UN0049_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m27_MA0562_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m82_MA0962_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m659_UN0003_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m669_UN0019_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m672_UN0025_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m163_MA1074_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m664_UN0011_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m123_MA1021_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m666_UN0015_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m79_MA0959_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m83_MA0963_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m32_MA0568_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m33_MA0569_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m30_MA0566_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m77_MA0957_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m78_MA0958_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_64/cluster_7_node_64_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_64/cluster_7_node_64_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_64/cluster_7_node_64_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_64/cluster_7_nb_motifs_35.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195207_nAZqzT


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_64/cluster_7_node_64_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m354_MA1363_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m227_MA1207_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m352_MA1361_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_65/cluster_7_node_65_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_65/cluster_7_node_65_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_65/cluster_7_node_65_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_65/cluster_7_nb_motifs_3.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195208_YeUb43


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_65/cluster_7_node_65_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m42_MA0580_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m353_MA1362_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m17_MA0552_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m355_MA1364_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_66/cluster_7_node_66_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_66/cluster_7_node_66_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_66/cluster_7_node_66_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_66/cluster_7_nb_motifs_4.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195211_djqFy0


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_66/cluster_7_node_66_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m755_UN0423_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m81_MA0961_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m478_MA1739_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m350_MA1357_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m351_MA1358_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_67/cluster_7_node_67_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_67/cluster_7_node_67_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_67/cluster_7_node_67_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_67/cluster_7_nb_motifs_5.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195214_Bp7skv


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_67/cluster_7_node_67_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m25_MA0560_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m53_MA0931_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m699_UN0063_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m684_UN0041_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m753_UN0421_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m768_UN0689_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m15_MA0549_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m329_MA1333_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m327_MA1331_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m328_MA1332_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m80_MA0960_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m397_MA1411_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m398_MA1412_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m479_MA1740_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m680_UN0037_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m686_UN0043_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m113_MA1011_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m84_MA0966_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m101_MA0988_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m76_MA0956_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m26_MA0561_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m133_MA1033_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m13_MA0128_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m157_MA1061_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m691_UN0049_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m27_MA0562_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m82_MA0962_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m659_UN0003_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m669_UN0019_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m672_UN0025_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m163_MA1074_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m664_UN0011_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m123_MA1021_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m666_UN0015_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m79_MA0959_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m83_MA0963_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m32_MA0568_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m33_MA0569_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m30_MA0566_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m77_MA0957_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m78_MA0958_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_68/cluster_7_node_68_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_68/cluster_7_node_68_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_68/cluster_7_node_68_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_68/cluster_7_nb_motifs_41.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195219_QOnnpp


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_68/cluster_7_node_68_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m354_MA1363_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m227_MA1207_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m352_MA1361_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m42_MA0580_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m353_MA1362_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m17_MA0552_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m355_MA1364_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_69/cluster_7_node_69_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_69/cluster_7_node_69_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_69/cluster_7_node_69_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_69/cluster_7_nb_motifs_7.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195220_Ugc7gs


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_69/cluster_7_node_69_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m618_MA0965_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m16_MA0551_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m640_MA1338_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m62_MA0941_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m127_MA1025_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m685_UN0042_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m551_MA1816_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m617_MA0964_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m561_MA1826_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m574_MA2014_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m642_MA1359_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m643_MA1360_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_70/cluster_7_node_70_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_70/cluster_7_node_70_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_70/cluster_7_node_70_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_70/cluster_7_nb_motifs_12.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195223_6b7Dd5


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_70/cluster_7_node_70_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m756_UN0424_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m698_UN0061_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m615_MA0930_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m752_UN0420_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m418_MA1672_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m409_MA0570_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m754_UN0422_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m543_MA1808_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m546_MA1811_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m641_MA1351_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m769_UN0690_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_71/cluster_7_node_71_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_71/cluster_7_node_71_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_71/cluster_7_node_71_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_71/cluster_7_nb_motifs_11.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195232_54pTqI


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_71/cluster_7_node_71_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m390_MA0550_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m354_MA1363_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m227_MA1207_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m352_MA1361_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m42_MA0580_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m353_MA1362_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m17_MA0552_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m355_MA1364_1_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_72/cluster_7_node_72_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_72/cluster_7_node_72_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_72/cluster_7_node_72_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_72/cluster_7_nb_motifs_8.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195250_UHgA6C


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_72/cluster_7_node_72_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m25_MA0560_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m53_MA0931_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m699_UN0063_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m684_UN0041_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m753_UN0421_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m768_UN0689_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m15_MA0549_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m329_MA1333_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m327_MA1331_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m328_MA1332_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m80_MA0960_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m397_MA1411_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m398_MA1412_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m479_MA1740_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m680_UN0037_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m686_UN0043_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m113_MA1011_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m84_MA0966_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m101_MA0988_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m76_MA0956_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m26_MA0561_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m133_MA1033_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m13_MA0128_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m157_MA1061_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m691_UN0049_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m27_MA0562_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m82_MA0962_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m659_UN0003_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m669_UN0019_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m672_UN0025_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m163_MA1074_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m664_UN0011_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m123_MA1021_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m666_UN0015_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m79_MA0959_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m83_MA0963_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m32_MA0568_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m33_MA0569_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m30_MA0566_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m77_MA0957_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m78_MA0958_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m618_MA0965_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m16_MA0551_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m640_MA1338_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m62_MA0941_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m127_MA1025_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m685_UN0042_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m551_MA1816_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m617_MA0964_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m561_MA1826_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m574_MA2014_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m642_MA1359_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m643_MA1360_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_73/cluster_7_node_73_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_73/cluster_7_node_73_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_73/cluster_7_node_73_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_73/cluster_7_nb_motifs_53.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195253_sF3yCf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_73/cluster_7_node_73_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m756_UN0424_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m698_UN0061_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m615_MA0930_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m752_UN0420_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m418_MA1672_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m409_MA0570_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m754_UN0422_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m543_MA1808_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m546_MA1811_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m641_MA1351_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m769_UN0690_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m25_MA0560_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m53_MA0931_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m699_UN0063_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m684_UN0041_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m753_UN0421_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m768_UN0689_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m15_MA0549_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m329_MA1333_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m327_MA1331_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m328_MA1332_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m80_MA0960_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m397_MA1411_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m398_MA1412_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m479_MA1740_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m680_UN0037_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m686_UN0043_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m113_MA1011_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m84_MA0966_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m101_MA0988_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m76_MA0956_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m26_MA0561_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m133_MA1033_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m13_MA0128_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m157_MA1061_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m691_UN0049_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m27_MA0562_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m82_MA0962_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m659_UN0003_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m669_UN0019_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m672_UN0025_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m163_MA1074_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m664_UN0011_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m123_MA1021_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m666_UN0015_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m79_MA0959_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m83_MA0963_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m32_MA0568_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m33_MA0569_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m30_MA0566_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m77_MA0957_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m78_MA0958_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m618_MA0965_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m16_MA0551_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m640_MA1338_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m62_MA0941_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m127_MA1025_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m685_UN0042_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m551_MA1816_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m617_MA0964_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m561_MA1826_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m574_MA2014_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m642_MA1359_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m643_MA1360_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_74/cluster_7_node_74_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_74/cluster_7_node_74_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_74/cluster_7_node_74_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_74/cluster_7_nb_motifs_64.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195256_ob61Es


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_74/cluster_7_node_74_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m390_MA0550_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m354_MA1363_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m227_MA1207_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m352_MA1361_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m42_MA0580_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m353_MA1362_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m17_MA0552_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m355_MA1364_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m756_UN0424_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m698_UN0061_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m615_MA0930_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m752_UN0420_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m418_MA1672_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m409_MA0570_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m754_UN0422_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m543_MA1808_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m546_MA1811_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m641_MA1351_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m769_UN0690_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m25_MA0560_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m53_MA0931_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m699_UN0063_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m684_UN0041_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m753_UN0421_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m768_UN0689_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m15_MA0549_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m329_MA1333_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m327_MA1331_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m328_MA1332_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m80_MA0960_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m397_MA1411_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m398_MA1412_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m479_MA1740_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m680_UN0037_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m686_UN0043_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m113_MA1011_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m84_MA0966_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m101_MA0988_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m76_MA0956_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m26_MA0561_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m133_MA1033_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m13_MA0128_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m157_MA1061_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m691_UN0049_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m27_MA0562_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m82_MA0962_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m659_UN0003_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m669_UN0019_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m672_UN0025_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m163_MA1074_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m664_UN0011_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m123_MA1021_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m666_UN0015_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m79_MA0959_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m83_MA0963_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m32_MA0568_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m33_MA0569_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m30_MA0566_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m77_MA0957_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m78_MA0958_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m618_MA0965_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m16_MA0551_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m640_MA1338_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m62_MA0941_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m127_MA1025_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m685_UN0042_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m551_MA1816_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m617_MA0964_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m561_MA1826_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m574_MA2014_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m642_MA1359_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m643_MA1360_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_75/cluster_7_node_75_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_75/cluster_7_node_75_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_75/cluster_7_node_75_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_75/cluster_7_nb_motifs_72.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195306_Ba2IdA


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_75/cluster_7_node_75_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m755_UN0423_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m81_MA0961_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m478_MA1739_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m350_MA1357_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m351_MA1358_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m390_MA0550_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m354_MA1363_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m227_MA1207_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m352_MA1361_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m42_MA0580_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m353_MA1362_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m17_MA0552_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m355_MA1364_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m756_UN0424_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m698_UN0061_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m615_MA0930_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m752_UN0420_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m418_MA1672_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m409_MA0570_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m754_UN0422_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m543_MA1808_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m546_MA1811_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m641_MA1351_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m769_UN0690_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m25_MA0560_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m53_MA0931_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m699_UN0063_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m684_UN0041_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m753_UN0421_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m768_UN0689_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m15_MA0549_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m329_MA1333_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m327_MA1331_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m328_MA1332_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m80_MA0960_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m397_MA1411_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m398_MA1412_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m479_MA1740_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m680_UN0037_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m686_UN0043_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m113_MA1011_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m84_MA0966_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m101_MA0988_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m76_MA0956_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m26_MA0561_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m133_MA1033_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m13_MA0128_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m157_MA1061_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m691_UN0049_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m27_MA0562_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m82_MA0962_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m659_UN0003_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m669_UN0019_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m672_UN0025_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m163_MA1074_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m664_UN0011_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m123_MA1021_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m666_UN0015_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m79_MA0959_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m83_MA0963_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m32_MA0568_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m33_MA0569_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m30_MA0566_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m77_MA0957_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m78_MA0958_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m618_MA0965_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m16_MA0551_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m640_MA1338_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m62_MA0941_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m127_MA1025_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m685_UN0042_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m551_MA1816_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m617_MA0964_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m561_MA1826_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m574_MA2014_1_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m642_MA1359_2_aligned.tf results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/JASPAR_2022_plants_UNVALIDATED_m643_MA1360_2_aligned.tf >results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_76/cluster_7_node_76_cat.tf


rsat merge-matrices -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_76/cluster_7_node_76_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_76/cluster_7_node_76_matrices.tf


rsat convert-matrix -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_76/cluster_7_nb_motifs_77.tf -from tf -return info,header,margins -o /home/jcastro/.rsat_tmp_dir/2021/10/04/IC_test_2021-10-04.195345_NTiNIq


cat results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_clusters_information/cluster_7/merged_consensuses/node_76/cluster_7_node_76_trimmed_matrices.tf >> results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_aligned_logos/All_concatenated_motifs.tf


rm -r results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_pairwise_compa_logos


cp /home/rsat/packages/rsat-2021/rsat/public_html/templates_html/display_d3_tree.html results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_logo_tree.html


cp /home/rsat/packages/rsat-2021/rsat/public_html/templates_html/display_small_d3_tree.html results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_portable_logo_tree.html


mv results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_temporary.html results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_logo_tree.html


mv results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_temporary_2.html results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_portable_logo_tree.html


/home/rsat/packages/rsat-2021/rsat/perl-scripts/text-to-html -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/pairwise_compa_matrix_descriptions.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_html/pairwise_compa_matrix_descriptions.html


/home/rsat/packages/rsat-2021/rsat/perl-scripts/text-to-html -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/distance_table.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/distance_table.html


/home/rsat/packages/rsat-2021/rsat/perl-scripts/text-to-html -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/alignment_table.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/alignment_table.html


/home/rsat/packages/rsat-2021/rsat/perl-scripts/text-to-html -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/clusters.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/clusters.html


/home/rsat/packages/rsat-2021/rsat/perl-scripts/text-to-html -i results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/clusters_motif_names.tab -o results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_tables/clusters_motif_names.html


mv -f results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_temporary_2.html results/JASPAR_2022_matrix_clustering/plants/UNVALIDATED/interactive_trees/JASPAR_2022_matrix_clustering_plants_UNVALIDATED_portable_logo_tree.html
